View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19344_low_6 (Length: 264)
Name: NF19344_low_6
Description: NF19344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19344_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 50094599 - 50094839
Alignment:
| Q |
17 |
agaaaagggatccaaatgctcccaaaagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacataccggtggt |
116 |
Q |
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| T |
50094599 |
agaaaagggatccaaatgctcccaagagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacataccggtggc |
50094698 |
T |
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| Q |
117 |
gtggaaatgatcacttttcttctgtaaaattgtctaaaactgttgatggaatgaatttcaaacactgctttttcttaatgacggaatctaaagaaaacta |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50094699 |
gtggaaatgatcacttttcttctataaaattgtctaaaactgttgatggaatgaatttcaaacactgctttttcttaatgacagaatctaaagaaaacta |
50094798 |
T |
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| Q |
217 |
atattgggatttcatttacggatgtggtaagagtaattgga |
257 |
Q |
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| T |
50094799 |
atattgggatttcatttacggatgtggtaagagtaattgga |
50094839 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 35497901 - 35497817
Alignment:
| Q |
17 |
agaaaagggatccaaatgctcccaaaagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgtt |
101 |
Q |
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|||||| |||||||||||| ||||| || | |||||||||||| ||| ||||||| || |||||||||||||||||||||||| |
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| T |
35497901 |
agaaaaaggatccaaatgcacccaagaggggaatgtctggattcatgttcttttctcaaatggaaagagaggtgtgttttatgtt |
35497817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 35497709 - 35497652
Alignment:
| Q |
186 |
ttttcttaatgacggaatctaaagaaaactaatattgggatttcatttacggatgtgg |
243 |
Q |
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|||| |||| ||| |||| |||||||| ||||| ||||||||||||||||||||||| |
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| T |
35497709 |
tttttttaacgacagaatataaagaaagctaatcctgggatttcatttacggatgtgg |
35497652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 7073822 - 7073894
Alignment:
| Q |
185 |
tttttcttaatgacggaatctaaagaaaactaatattgggatttcatttacggatgtggtaagagtaattgga |
257 |
Q |
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||||| |||||||| ||||||||||||||||||| ||| |||||||||||||| |||| ||||||| ||||| |
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| T |
7073822 |
ttttttttaatgacagaatctaaagaaaactaatcctggaatttcatttacggacgtgggaagagtacttgga |
7073894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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