View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19344_low_8 (Length: 241)
Name: NF19344_low_8
Description: NF19344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19344_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5746951 - 5746711
Alignment:
| Q |
1 |
ctctatcatcattgtcattgcatggccaaagtagtaatgctagtgatgagtatgatcataagccaattcttgatataccttgtgatgaaagaaatgaatt |
100 |
Q |
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| T |
5746951 |
ctctatcatcattgtcattgcatggccaaagtagtaatgctagtgatgagtatgatcataagccaattcttgatataccttgtgatgaaagaaatgaatt |
5746852 |
T |
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| Q |
101 |
agggttcgactccggagaaatacttcaccacaggnnnnnnnncttcttcttttcttaatgtttatgtcattaacttgaaaaagttgcaataccgacggaa |
200 |
Q |
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| T |
5746851 |
agggttcgactccggagaaatacttcaccacaggttttttttcttcttcttttcttaatgtttatgtcattaacttgaaaaagttgcattaccgacagaa |
5746752 |
T |
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| Q |
201 |
atatggttagtagtatgggttgaacattgatggagtattat |
241 |
Q |
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| T |
5746751 |
atatggttagtagtatgggttgaacattgatggagtattat |
5746711 |
T |
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