View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19344_low_9 (Length: 239)
Name: NF19344_low_9
Description: NF19344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19344_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 29617558 - 29617338
Alignment:
| Q |
18 |
acacatcgttggtcatggaagtgtaggaagatgaggatagttgattggccatgagaatgatactttttgtctttaatggattcattcattttatagttat |
117 |
Q |
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| T |
29617558 |
acacatcgttggtcatggaagtgtaggaagatgaggatagttgattggccatgagaatgatactttttgtctttaatggattcattcattttatt-ttat |
29617460 |
T |
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| Q |
118 |
tttatcgttggttgggtcgggtaatcaatagtcaagtcaatcaacaaagaattttaaattataaatccgaaacgcggtaatctcttttgtcgctactcgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29617459 |
tttatcgttggttgggtcgggtaatcaatagtcaagtcaatcaacaaagaattttaaattataaatccgacacgcggtaatctcttttgtcgctactcgc |
29617360 |
T |
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| Q |
218 |
tactaaagaaataagtgttctt |
239 |
Q |
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|||||||||||||||| ||||| |
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| T |
29617359 |
tactaaagaaataagtattctt |
29617338 |
T |
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