View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19345_high_2 (Length: 326)
Name: NF19345_high_2
Description: NF19345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19345_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 279834 - 279528
Alignment:
| Q |
18 |
agaatgagtacatcatccaatgaaattcatgtaatttggtaaatatactcctaaaagaacaagagagcgtgtatattacttttttgattataatttccac |
117 |
Q |
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| T |
279834 |
agaatgagtacatcatccaatgaaattcatgtaatttggtaaatatactcctaaaagaacaagagagcgtgtatattacttttttgattataatttccac |
279735 |
T |
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| Q |
118 |
gtaatgcttatacaaagaatcaagaaaccaactcaatttg--atctcattatttagaagtaaaggtttgctttgtaatcaatttcatatatgctaagaat |
215 |
Q |
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| T |
279734 |
gtaatgcttatacaaagaatcaagaaaccaactcaatttgatatctcattatttagaagtaaaggtttgctttgtaatcaatttcatatatgctaagaat |
279635 |
T |
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| Q |
216 |
taaatagaaaacagc-nnnnnnntcagaaaaatggaatggaactcgggtctcttaaagtgctgcattctcttttattggtatgttgttatgcatatcctt |
314 |
Q |
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| T |
279634 |
taaatagaaaacagcaaaaaaaatcacaaaaatggaatggaactcgggtctcttaaagtgctgcattctcttttattggtatgttgttatgcatatcctt |
279535 |
T |
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| Q |
315 |
tgctact |
321 |
Q |
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| T |
279534 |
tgttact |
279528 |
T |
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