View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19345_low_3 (Length: 294)
Name: NF19345_low_3
Description: NF19345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19345_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 48436728 - 48436464
Alignment:
| Q |
13 |
tcatcattgccgtcttgaacgatggaaccatcatgaccatctctaaggatagagtaaagccatcaccagttcctgattcatggaagcttaaagaaatctt |
112 |
Q |
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| T |
48436728 |
tcatcattgccgtcttgaacgatggaaccatcatgaccatctctaaggatagagtaaagccatcactagttcctgattcatggaagcttaaagaaatctt |
48436629 |
T |
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| Q |
113 |
tgctactggaattgttcttggatcttacatggccatcatcactgttgtgttcttctatttagttcacgacactgatttcttcaccgtaagtatttctagc |
212 |
Q |
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| T |
48436628 |
tgctactggaattgttcttggatcttacatggccattatcactgttgtgttcttctatttagttcacgacactgatttcttcaccgtaagtatttctagc |
48436529 |
T |
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| Q |
213 |
agtttgaaattcaacactcccttggttgcaaattgatcatcgttttaacgtataaaatttatttc |
277 |
Q |
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| T |
48436528 |
agtttgaaattcaacactcccttggttgcaaattgatcatcgtttgaacgtataaaatttatttc |
48436464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 53074873 - 53074841
Alignment:
| Q |
102 |
aaagaaatctttgctactggaattgttcttgga |
134 |
Q |
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| T |
53074873 |
aaagaaatatttgctactggaattgttcttgga |
53074841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 21980311 - 21980134
Alignment:
| Q |
27 |
ttgaacgatggaaccatcatgaccatctctaaggatagagtaaagccatcaccagttcctgattcatggaagcttaaagaaatctttgctactggaattg |
126 |
Q |
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| T |
21980311 |
ttgaatgatggaaccatcatgaccatctccaaggacagggtgaagccatctcctgttcccgattcatggaagctcaaagaaatcttcgcaacaggagttg |
21980212 |
T |
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| Q |
127 |
ttcttggatcttacatggccatcatcactgttgtgttcttctatttagttcacgacactgatttcttcaccgtaagta |
204 |
Q |
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| T |
21980211 |
ttcttggaacatatatggccatcatgactgcagttttcttccattttattcacgacaccgatttcttctcagtaagta |
21980134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 45197197 - 45197115
Alignment:
| Q |
33 |
gatggaaccatcatgaccatctctaaggatagagtaaagccatcaccagttcctgattcatggaagcttaaagaaatctttgc |
115 |
Q |
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| T |
45197197 |
gatggtactatcatgaccatttcgaaggatagagtaaagccatctcctatgccagattcatggaagttgaaggaaatttttgc |
45197115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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