View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_high_10 (Length: 383)
Name: NF19346_high_10
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 36687263 - 36686894
Alignment:
| Q |
1 |
caataactatgttctctagcttagcatcttaatcaacaacnnnnnnnn-tccataatttcatcttattatcaatctgtcattataaaattcgaatactgg |
99 |
Q |
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| T |
36687263 |
caataactatgttctctagcttaacatcttaatcaacaacaaaaaaaaatccataatttcatcttattatcaatctgtcattataaaattcgaatactgg |
36687164 |
T |
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| Q |
100 |
taaacccaatcaaatctcaccatatagatatttggaaatatatgatcgtgtgatttgatattatgcttcactnnnnnnn-cttatatcgtcgatgcacat |
198 |
Q |
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| T |
36687163 |
taaacccaataacatctcaccatatagatatttggaaatatatgatcgtgtgatttgatattttgcttcactaaaaaaaacttatatcgtcgatgcacat |
36687064 |
T |
|
| Q |
199 |
cgattaaataacctaatcatttaannnnnnnnncct-ccgacttttataggctgttttggcaagatgggaacctcgtcatgggaagttcagatttcgtca |
297 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36687063 |
cgattaaataacctaatcatttaatttgttttttcttccgacttttataggctgttttggcaagatgggaacctcgtcatggcaagttcagatttcgtca |
36686964 |
T |
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| Q |
298 |
tccatggaagcaatacttaaagattgggaacttggcacgaatttgtgcttacaaaattgaagcacttagt |
367 |
Q |
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| T |
36686963 |
tccatggaagcaatacttaaagattgggaacttggcacgaatttgtgcttacaaaattgaagcacttagt |
36686894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 18532636 - 18532692
Alignment:
| Q |
257 |
gcaagatgggaacctcgtcatgggaagttcagatttcgtcatccatggaagcaatac |
313 |
Q |
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| T |
18532636 |
gcaagatgggaaccaggtcatggcaagttcaaatttcgtcacccatggaatcaatac |
18532692 |
T |
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