View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_high_2 (Length: 668)
Name: NF19346_high_2
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 611; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 15 - 648
Target Start/End: Original strand, 491387 - 492021
Alignment:
| Q |
15 |
tagcatagggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaa |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491387 |
tagcaaagggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaa |
491486 |
T |
|
| Q |
115 |
cttattgtaataaggaaatgatatcttaacaggaaattgttaacttgtgatttt-ttcatctctaaatctattagttgattcaacttgtatctctggcat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491487 |
cttattgtaataaggaaatgatatcttaacaggaaattgttaacttgtgatttttttcatctctaaatctattagttgattcaacttgtatctctggcat |
491586 |
T |
|
| Q |
214 |
tgatagcttcaaagaactgaaactataaaattgttgttttgtccatcggttgggtatgtaaagtttagttgttgacatgtaatttttagatacttctggt |
313 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491587 |
tgatagcttcaaagaactgaaactataagattgttgttttgtccatcggttgggcatgtaaagtttagttgttgacatgtaatttttagatacttctggt |
491686 |
T |
|
| Q |
314 |
ctacctcttctatgtccaaatggatatttttatctataaaacacttaagtctaatctaattttgattcacaatgcaagtaggtacagtattattgatgct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491687 |
ctacctcttctatgtccaaatggatatttttatctataaaacactcaagtctaatctaattttgattcacaatgcaagtaggtacagtattattgatgct |
491786 |
T |
|
| Q |
414 |
caaaaagggcatcaagaatcatgagataagcttgcatctgaaattatcatgtataactaaggataaagtgtactgaatcatcagtagttgtgccaataaa |
513 |
Q |
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| T |
491787 |
caaaaagggcatcaagaatcatgagataagcttgcatctgaaattatcatgtataactaaggataaagtgtactgaatcatcagtagttgtgccaataaa |
491886 |
T |
|
| Q |
514 |
aactacgaagataaaagttagtcaaatcataggaaatcaaatacagcacaaaaaggaaaaacattactgtcactactgcatgctcacaatatcttgactc |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491887 |
aactacgaagataaaagttagtcaaatcataggaaatcaaatacagcacaaaaaggaaaaacattactgtcactactgcatgctcacaatatcttgactc |
491986 |
T |
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| Q |
614 |
tgctgaaccaagtgcttcacaaaatatgacttgtt |
648 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
491987 |
tgctgaaccaagtgcttcacaaaatatgacttgtt |
492021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 495061 - 495255
Alignment:
| Q |
23 |
ggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaacttattgt |
122 |
Q |
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|||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||| | |||||| ||| ||| |
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| T |
495061 |
ggggaaagattgtactatgactacaatggatacgaacatgaatatccatctgaacattttgtctaattatgtagactgtcagtgctctacagcttgttgc |
495160 |
T |
|
| Q |
123 |
aataaggaaatgatatc-ttaacaggaaattgttaacttgtgattttttcatctctaaatctattagttgattcaacttgtatctctggcattga |
216 |
Q |
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|||||| |||| ||| | |||||||| |||||||||||||| ||| ||| |||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
495161 |
aataagaaaataataactttaacagggaattgttaacttgtattttattcttctctaaatctattagttgattcaacatgtacctttggcattga |
495255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 503312 - 503417
Alignment:
| Q |
21 |
agggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcc--tgtcaataatctacaactta |
118 |
Q |
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|||| ||||| |||||||||||||||||||||| ||| ||| |||||||||| |||||||||| ||| |||||||| ||||||| ||||| |||||| |
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| T |
503312 |
agggagaaagattgtattatgactacaatggatccgaaaatgcatatccaactaaacattttgtttaaccgtgtagcctttgtcaatgatctagaactta |
503411 |
T |
|
| Q |
119 |
ttgtaa |
124 |
Q |
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|||||| |
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| T |
503412 |
ttgtaa |
503417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 500054 - 500095
Alignment:
| Q |
56 |
gaacatgaatatccaactgaacattttgtctaattgtgtagc |
97 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
500054 |
gaacatgaatatccagctgaatattttgtctaattgtgtagc |
500095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 8762629 - 8762450
Alignment:
| Q |
21 |
agggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaacttatt |
120 |
Q |
| |
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||||| |||||||||| ||||| | |||||||| |||||||||| || ||| | |||||||||| |||||||||||| | | ||| |||| | |||| | |
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| T |
8762629 |
aggggaaaaggttgtactatgattgcaatggataagaacatgaaaattcaaataaacattttgtataattgtgtagcatttgaatgctctagagcttagt |
8762530 |
T |
|
| Q |
121 |
gtaataaggaaatgatatctt-aacaggaaattgttaacttgtgatttt-ttcatctctaaatctattagttgattcaac |
198 |
Q |
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|| | ||| |||| || ||| |||||| ||| ||| |||||||||||| ||||||| ||| ||||||| |||||||||| |
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| T |
8762529 |
gtgacaagaaaatagtaacttcaacagggaatagttgacttgtgattttattcatctttaattctattatttgattcaac |
8762450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 8767710 - 8767531
Alignment:
| Q |
21 |
agggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaacttatt |
120 |
Q |
| |
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||||| ||| |||||| ||||| | |||||||| |||| |||| || ||||| |||||||||| |||||||||||| ||| ||| |||| | |||| | |
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| T |
8767710 |
aggggaaaaagttgtactatgattgcaatggataggaacttgaaaattcaactaaacattttgtataattgtgtagcatgtgaatgctctagagcttagt |
8767611 |
T |
|
| Q |
121 |
gtaataaggaaatgatatctt-aacaggaaattgttaacttgtgatttt-ttcatctctaaatctattagttgattcaac |
198 |
Q |
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|| ||||| |||| || ||| |||||| ||| ||| |||||| ||||| ||||||| ||| ||||||| |||||||||| |
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| T |
8767610 |
gtgataagaaaatagtaacttcaacagggaatagttgacttgtaattttattcatctttaattctattatttgattcaac |
8767531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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