View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_high_20 (Length: 229)
Name: NF19346_high_20
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 26722621 - 26722829
Alignment:
| Q |
9 |
gaggagcacagacgcatgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgtccnnnnnnnnnn---ccttcctgcaattg |
105 |
Q |
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| T |
26722621 |
gaggaacacaaacgcatgatgttgcatgttaagaaaataaagtcaagtgcttaaattggtatagtttctgtcctttttttttttttccttcctgcaattg |
26722720 |
T |
|
| Q |
106 |
gtatagtttttgttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26722721 |
gtatagtttttgttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgaagttatcttttgatttttggta |
26722820 |
T |
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| Q |
206 |
agttaattt |
214 |
Q |
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||||||||| |
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| T |
26722821 |
agttaattt |
26722829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 26837902 - 26837847
Alignment:
| Q |
118 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaa |
173 |
Q |
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| T |
26837902 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaa |
26837847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 7850924 - 7850981
Alignment:
| Q |
24 |
atgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgtcc |
81 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
7850924 |
atgatgttgcatgttaagaaaataaagttaagaacttaaaatggtatagtttctgtcc |
7850981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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