View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_high_24 (Length: 202)
Name: NF19346_high_24
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5809375 - 5809261
Alignment:
| Q |
1 |
tgtctatgtattttctttattttggtgaggtacatatgatagcttattatcacatcttatagccttatagactagttctgttataatctctatttaattt |
100 |
Q |
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| T |
5809375 |
tgtctatgtattttctttattttggtgaggtacatatgatagcttattatcacatcttataggcttatagactacttctgttataatctctatttaattt |
5809276 |
T |
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| Q |
101 |
ttcattcgtttatgt |
115 |
Q |
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||||||| ||||||| |
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| T |
5809275 |
ttcattcctttatgt |
5809261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 37754750 - 37754630
Alignment:
| Q |
66 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggag |
165 |
Q |
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| T |
37754750 |
tatagcctagttttattataatttctaataaagttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtgg |
37754651 |
T |
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| Q |
166 |
aaaagtcttgtgtcctaatat |
186 |
Q |
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|| ||||||||||||| |||| |
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| T |
37754650 |
aacagtcttgtgtcctgatat |
37754630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 37760724 - 37760604
Alignment:
| Q |
66 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggag |
165 |
Q |
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| T |
37760724 |
tatagcctagttttattataatttctaataaagttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtgg |
37760625 |
T |
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| Q |
166 |
aaaagtcttgtgtcctaatat |
186 |
Q |
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|| ||||||||||||| |||| |
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| T |
37760624 |
aacagtcttgtgtcctgatat |
37760604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 37738892 - 37738773
Alignment:
| Q |
66 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggag |
165 |
Q |
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||||| |||||| ||||||||| |||| | || |||| ||| |||||||| ||| |||||||||| |||||||| |||| || |||||||| ||| | |
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| T |
37738892 |
tatagcctagttttgttataatttctactaaagttttgtttcaattatgtcttaattcaactttcaa-cgtatttcttcttccataatatgtggttgtgg |
37738794 |
T |
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| Q |
166 |
aaaagtcttgtgtcctaatat |
186 |
Q |
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|| |||||||||||||||||| |
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| T |
37738793 |
aacagtcttgtgtcctaatat |
37738773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 38605959 - 38606051
Alignment:
| Q |
66 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtg |
158 |
Q |
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||||| |||||| | ||||||| |||| | || ||||||||| |||||||| ||| ||||||||||| ||||||| ||||||| |||||||| |
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| T |
38605959 |
tatagcctagttttattataatttctaataaagttttcattcaattatgtcttaattcaactttcaatagtatttcttctttcataatatgtg |
38606051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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