View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19346_high_4 (Length: 517)
Name: NF19346_high_4
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 80 - 501
Target Start/End: Complemental strand, 14847479 - 14847056
Alignment:
| Q |
80 |
ctattatttattaaactgacactatataaagactattttataattgtctcttagaaagtttgaactcattctcttaaagttacaaggtcaaactcttaaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
14847479 |
ctattatttattaaactgacactatataaagactattttataattgtctcttaaaaagtttgaactcattctcttaaaattacaaggtcaaattcttaaa |
14847380 |
T |
|
| Q |
180 |
tcttactagtgagctgacacttcatgcaaaggtttattactgattagagatagggtttatccatgtatga--tatagctttctttatgtctaaagcaatg |
277 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
14847379 |
tcttactagtgaactgacacttcatgcaaaggtttattactaattagagatagggtttatccatgtatgatatatagctttctttatgtctaaaacaatg |
14847280 |
T |
|
| Q |
278 |
ccattatgcaaaatatcaagttcttccatcccttactaagctaatagatcaaagattgttaatttaatttaaataaaaatgattttgtattcannnnnnn |
377 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14847279 |
ccattatgcaaaatataaagttctttcatcccttactaagctaatagatcaaagattgttaatttaatttaaataaaaatgattttgtattcattttttt |
14847180 |
T |
|
| Q |
378 |
cttttcattgtatatatccaatccttcaccacgtgtgttttgtattattacattgaacgaatccattttcattacatgcattatttcctaatcaaaagaa |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14847179 |
cttttcattgtatatatccaatccttcaccacgtgtgttttgtattattacattgaacgaatccattttcattacatgcattatttcctaatcaaaagaa |
14847080 |
T |
|
| Q |
478 |
acctaaagctaggtgttataaagg |
501 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
14847079 |
acctaaagctagatgttataaagg |
14847056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 14847547 - 14847504
Alignment:
| Q |
13 |
aaaataataaagtggtcacgaactttaaatttgttattatttat |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14847547 |
aaaataataaagtggtcacgaactttaaatttattattatttat |
14847504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 5620565 - 5620617
Alignment:
| Q |
125 |
gtctcttagaaagtttgaactcattctcttaaagttacaaggtcaaactctta |
177 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5620565 |
gtctctgagaaactttgaactccttctcttacagttacaaggtcaaactctta |
5620617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University