View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_high_8 (Length: 408)
Name: NF19346_high_8
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 30346608 - 30346221
Alignment:
| Q |
9 |
agcataggggactaagagcagttaagctcaacaaattatgaaatgacttttactagatttaataactccaacaagttttcacttcaagatagtaacactt |
108 |
Q |
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| T |
30346608 |
agcatagaggactaagagcagttaagctcaacaaattatgaaatgacttttactagatttaataactccaacaagttttcacttcaagatagtaacactt |
30346509 |
T |
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| Q |
109 |
cagaacttgaattaatctcgcaattgggaaaggaaaatttgagtgtcagtcaatttattccgtgcactaaagtactagataatgctttgaatagtctcat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30346508 |
cagaacttgaattaatctcgcaattgggaaaggaaaatttgagtgtcagtcaatttattccgtgcactaaagtactagataatgccttgaatagtctcat |
30346409 |
T |
|
| Q |
209 |
gtttatcaagacaaacnnnnnnnnnngacaagattatcaagacaaacattaaaactttaaagttatggtactgaattaagnnnnnnngactaaattaata |
308 |
Q |
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| T |
30346408 |
gtttatcaagacaaactttttttttt-acaagattatcaagacaaacattaaaactttaaagttatggtactgaattaagaaaaaaagactaaattaata |
30346310 |
T |
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| Q |
309 |
accaaagttctctaatttaagagactaatttaacatcaattttatggtacacaagtgagacaagatttacatcatacacgagcttgttt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346309 |
accaaagttctctaatttaagagactaatttaacatcaattttatggtacacaagtgagacaagatttacatcatacacgagcttgttt |
30346221 |
T |
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