View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_high_9 (Length: 402)
Name: NF19346_high_9
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 21 - 398
Target Start/End: Original strand, 4946617 - 4946994
Alignment:
| Q |
21 |
aaatcgaatcgaatttttaggaaagaaactgaagatgatgcaaattatgtcccctatctatgtgcctgaacttgtaagcatactactgtcaaagatcacc |
120 |
Q |
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| T |
4946617 |
aaatcgaatcgaatttttaggaaagaaactgaagatgatgcaaattatgtcccctatctatgtgcctgaacttgtaagcatactactgtcaaagatcgcc |
4946716 |
T |
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| Q |
121 |
tatcttaaaattcttaaactcttaagtaatcataactatagctgaacttgaaatattaaagtgattcatcttagaatcctagttctcgaataatttttgg |
220 |
Q |
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| T |
4946717 |
tatcttaaaattcttaaactcttaagtaatcataactatagctgaacttgaaatattaaagtgattcatcttagaatcctagctctcgaataatttttgg |
4946816 |
T |
|
| Q |
221 |
ccaaacattattttctggtcgaactttggattatgatgtttactccgataaaatgaatttgcatatgtatagaagaagaaagcttactctttaactaatt |
320 |
Q |
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| T |
4946817 |
ccaaacattattttctggtcgaactttggattatgatgtttactcggataaaatgaatttgcatatgtatagaagaagaaagcttactctttaaataatt |
4946916 |
T |
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| Q |
321 |
ttgaacagggaatggaggatctcaatttctttaaccaatacacgatggattctcttgcatctccaatattcttcgaca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
4946917 |
ttgaacagggaatggaggatctcaatttctttaaccaatacacgatggattctcttgcatctccaacattattcgaca |
4946994 |
T |
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