View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19346_low_1 (Length: 819)

Name: NF19346_low_1
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19346_low_1
NF19346_low_1
[»] chr3 (8 HSPs)
chr3 (136-801)||(29214206-29214868)
chr3 (561-767)||(29211192-29211399)
chr3 (15-140)||(29214904-29215029)
chr3 (179-246)||(32208072-32208139)
chr3 (180-246)||(36924412-36924477)
chr3 (327-368)||(29211530-29211571)
chr3 (183-275)||(52041516-52041608)
chr3 (384-422)||(38272690-38272728)
[»] chr2 (1 HSPs)
chr2 (179-246)||(879469-879536)
[»] chr7 (3 HSPs)
chr7 (179-246)||(47992414-47992481)
chr7 (179-245)||(9639275-9639341)
chr7 (433-513)||(29814337-29814415)
[»] chr8 (2 HSPs)
chr8 (179-246)||(105459-105528)
chr8 (179-248)||(42192870-42192939)
[»] chr1 (2 HSPs)
chr1 (191-246)||(50746512-50746567)
chr1 (184-244)||(43325438-43325497)
[»] chr4 (1 HSPs)
chr4 (179-245)||(13597904-13597970)
[»] chr5 (1 HSPs)
chr5 (387-454)||(14874090-14874157)
[»] scaffold0172 (1 HSPs)
scaffold0172 (179-224)||(19454-19499)
[»] chr6 (1 HSPs)
chr6 (179-224)||(30438100-30438144)


Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 136 - 801
Target Start/End: Complemental strand, 29214868 - 29214206
Alignment:
Q  136 atagtttaagaaatcaatggtagtaacttttgcatgtattatcattactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattt 235  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29214868 atagtttaagcaattaatggtagtaacttttgcatgtatgatcattactttttcatatatttgacttatgttttcaagagaatatttctatctatgattt 29214769  T
Q  236 tcttaaacaatattttaagatactttttagcaaaaccctaannnnnnnnagataagactctgcttgcatcctca-catgtcatgaagtcccgtcttatac 334  Q
    ||||||||||| |||||||| ||||||||||||||||||||        ||||||| || |||||||||||||| ||||||||||||||||||||||||     
T  29214768 tcttaaacaatgttttaagacactttttagcaaaaccctaattttttt-agataagtctatgcttgcatcctcaacatgtcatgaagtcccgtcttatag 29214670  T
Q  335 taatgactaatgaggtgctcgattttggaggagatgagggaaaataacctatttttcctttttaaattaaggaagctaaaaaatgtttttnnnnnnntta 434  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||        |||    
T  29214669 taatgactaatgaggtgctcgattttggaggagatgagagaaaataacctatttttcctttttaaattaaggaagctaaaaaaa-ttttaaaaaaaatta 29214571  T
Q  435 agtgcgattgaaatgttatacacgatcatctatgatgttattatttcaattcttcaaaatatcaaatatataataaaatgctaagtaacctacaaaatta 534  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29214570 agtgcgattgaaatgttatatacgatcatttatgatgttattatttcaattcttcaaaatatcaaatatataataaaatgctaagtaacctacaaaatta 29214471  T
Q  535 actccttcnnnnnnnnnctcaaataaatagtgtagaaatggaaatacaaaacttagattcaagacaaagcattagaaagtctgattggaattgaaaagac 634  Q
     |||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29214470 tctccttcaaaaaaac-ctcaaataaatagtgtagaaatggaaatacaaaacttagattcaagacaaagcattagaaagtgtgattggaattgaaaagac 29214372  T
Q  635 tgccaatgcaatttcagttacacagtattgatacatgatggtattgctgaaagaatgtttgggaattggatattataataactaatttcttaaaagacaa 734  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29214371 tgccaatgcaatttcagttacacagtattgatacatgatggtattgctgaaagaatgtttgggaattggatattataataactaatttctt-aaagacaa 29214273  T
Q  735 aatataaatacccttgaattgacatattggcaattggatctcagtgacataataagattaacaaact 801  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29214272 aatataaatacccttgaattgacatattggcaattggatctcagtgacataataagattaacaaact 29214206  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 561 - 767
Target Start/End: Complemental strand, 29211399 - 29211192
Alignment:
Q  561 atagtgtagaaatggaaatacaaaacttagattcaagacaaagcattagaaagtctgattggaattgaaaagactgccaatgcaatttcagttacacagt 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||| | || |    
T  29211399 atagtgtagaaatggaaatacaaaacttagattcaagacaaagcattagaaagtgtgactggaattgaaaagactgccaatgaaattttagttgctcaat 29211300  T
Q  661 attgatacatgatggtattgctgaaagaatgtttgggaattggatattata--ataactaatttcttaaaagacaaaatataaatacccttgaattgaca 758  Q
    |||||||||||||| ||| | ||||||||| ||||| ||||||||||||||  ||||||||||||||  ||||||||| |||||| ||||||||||||||    
T  29211299 attgatacatgatgatatggttgaaagaatatttggtaattggatattataatataactaatttctt-gaagacaaaaaataaatgcccttgaattgaca 29211201  T
Q  759 tattggcaa 767  Q
    |||||||||    
T  29211200 tattggcaa 29211192  T

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Target: chr3; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 29215029 - 29214904
Alignment:
Q  15 tattctatagaagaaattgaaatacaataccaacatgggttgacacatatggtcaaagattgagagttaaactcaaatttagtatgttcgaccgggtaaa 114  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29215029 tattctatagtagaaattgaaatacaataccaacatgggttgacacatatggtcaaagattgagagttaaactcaaatttagtatgttcgaccgggtaaa 29214930  T
Q  115 tttgtttaaggtttagatcgtatagt 140  Q
    ||||||||||||||||||||||||||    
T  29214929 tttgtttaaggtttagatcgtatagt 29214904  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 32208139 - 32208072
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 246  Q
    ||||||||||||||||||||||||||||||| || | ||||||| ||| |||||||||||||||||||    
T  32208139 attactttttcatatgtttgacttatgtttttaaaaaaatatttttatttatgattttcttaaacaat 32208072  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 36924412 - 36924477
Alignment:
Q  180 ttactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 246  Q
    ||||||||| |||||||||| ||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  36924412 ttacttttttatatgtttgaattatgtttttaagagaatatttttat-tatgatttccttaaacaat 36924477  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 29211571 - 29211530
Alignment:
Q  327 tcttatactaatgactaatgaggtgctcgattttggaggaga 368  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  29211571 tcttatagtaatgactaatgaggtgatcgattttggaggaga 29211530  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 52041608 - 52041516
Alignment:
Q  183 ctttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaatat-tttaagatactttttagcaaaacccta 275  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| |||| |||  ||||||||| | |||| || |||| ||||||| ||||||    
T  52041608 ctttttcatatgtttgatttatgtttt-gagagaatatttctatttatggtttcattaaacaatgtctttaggacacttgttagcaagacccta 52041516  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 38272690 - 38272728
Alignment:
Q  384 tatttttcctttttaaattaaggaagctaaaaaatgttt 422  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  38272690 tatttttcttttttaaattaaggaagctataaaatgttt 38272728  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 879536 - 879469
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 246  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||    
T  879536 attactttttcatatgtttgacttatgttttcaaaagaatatttctatttatggtttgcttaaacaat 879469  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 47992481 - 47992414
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 246  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||| ||| |||||||| ||||||||||    
T  47992481 attactttttcatatatttaacttatgttttcaaaagaatatttatatttatgatttccttaaacaat 47992414  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 9639341 - 9639275
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaa 245  Q
    ||||||||||||||||||||| || |||||||||||||||||||| || |||| |||  ||||||||    
T  9639341 attactttttcatatgtttgatttgtgttttcaagagaatatttcgatttatggtttctttaaacaa 9639275  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 513
Target Start/End: Complemental strand, 29814415 - 29814337
Alignment:
Q  433 taagtgcgattgaaatgttatacacgatcatctatgatgttattatttcaattcttcaaaatatcaaatatataataaaat 513  Q
    |||||| | |||||||||||||   |||||||||| ||||||||  ||||||| || ||||| ||||||||||| ||||||    
T  29814415 taagtgtggttgaaatgttatat--gatcatctatcatgttattcgttcaattttttaaaatctcaaatatatactaaaat 29814337  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 105459 - 105528
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaata--tttctatctatgattttcttaaacaat 246  Q
    |||| ||||||||||||||||||| ||||||||||||||||  ||| ||| |||||||||||||||||||    
T  105459 attattttttcatatgtttgacttgtgttttcaagagaatatttttttatttatgattttcttaaacaat 105528  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 42192870 - 42192939
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaatat 248  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||| ||| ||| ||||  ||||| |||||    
T  42192870 attactttttcatatatttgacttatattttcaagaaaatatttatatttattatttctttaaataatat 42192939  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 50746512 - 50746567
Alignment:
Q  191 tatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 246  Q
    |||||||||||||||||||||||| || |||||||| |||||||| ||||||||||    
T  50746512 tatgtttgacttatgttttcaagaaaacatttctatttatgatttccttaaacaat 50746567  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 43325438 - 43325497
Alignment:
Q  184 tttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaaca 244  Q
    |||||||||||||||||| |||||||||||||||||||| ||| |||| ||| ||||||||    
T  43325438 tttttcatatgtttgact-atgttttcaagagaatatttttatttatggtttccttaaaca 43325497  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 13597904 - 13597970
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaa 245  Q
    ||||||||||||||||||||| || |||||||||||||||||||| || |||| |||  ||||||||    
T  13597904 attactttttcatatgtttgatttgtgttttcaagagaatatttcgatttatggtttctttaaacaa 13597970  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 387 - 454
Target Start/End: Original strand, 14874090 - 14874157
Alignment:
Q  387 ttttcctttttaaattaaggaagctaaaaaatgtttttnnnnnnnttaagtgcgattgaaatgttata 454  Q
    ||||| ||| |||||||||||||||| |||||||||||       ||||||| |||||||||||||||    
T  14874090 ttttcttttctaaattaaggaagctataaaatgttttttaaaaagttaagtgtgattgaaatgttata 14874157  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 19499 - 19454
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaatatttct 224  Q
    ||||||||| ||| |||||||||||||||||||||| || ||||||    
T  19499 attacttttacatgtgtttgacttatgttttcaagataaaatttct 19454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 30438100 - 30438144
Alignment:
Q  179 attactttttcatatgtttgacttatgttttcaagagaatatttct 224  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||    
T  30438100 attactttttcatatgtttgatttatg-tttcaagaaaatatttct 30438144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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