View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_11 (Length: 355)
Name: NF19346_low_11
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 37260040 - 37259849
Alignment:
| Q |
18 |
atatctttggtaaaattactgttttgatcctttaattatatctctattgctcaaatatgtttcttccttcattattaagcctcaaatatctaatcggtgg |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37260040 |
atatctttggtaaaattactcttttgatcctttaattatatctctattgctcaaatatgtttcttccttcattattaagcctcaaatatctaatcggtgg |
37259941 |
T |
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| Q |
118 |
tacatcaaagactttattaatattttttaatttaactgnnnnnnngttacaactgtttgatcttattgtaaaaataaagtcattttaactgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37259940 |
tacatcaaagactttattaatattttttaatttaactgtttttttgttacaactgtttgatcttattgtaaaaataaagtcattttaactgt |
37259849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 37266473 - 37266286
Alignment:
| Q |
18 |
atatctttggtaaaattactgttttgatcctttaattatatctctattgctcaaatatgtttcttccttcattattaagcctcaaatatctaatcggtgg |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37266473 |
atatctttggtaaaattactcttttgatcctttaattatatctctattgctcaaatatgtttcttccttcattattaagcctcaaatatctaatcggtgg |
37266374 |
T |
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| Q |
118 |
tacatcaaagactttattaatattttttaatttaactgnnnnnnngttacaactgtttgatcttattgtaaaaataaagtcattttaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37266373 |
tacatcaaagactttattaatattttttaatttaactgtttttttgttacaactgtttgatcttattgtaaaaataaagtcattttaa |
37266286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 37266189 - 37266146
Alignment:
| Q |
303 |
ccctcctcttctgttgtcttctatctcatgcaacaaaacctatg |
346 |
Q |
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| T |
37266189 |
ccctcctcttctgttgtcttctatctcatgcaacaaaacctatg |
37266146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 37259767 - 37259725
Alignment:
| Q |
304 |
cctcctcttctgttgtcttctatctcatgcaacaaaacctatg |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37259767 |
cctcctcttctgttgtcttctatctcatgcaacaaaacctatg |
37259725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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