View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_12 (Length: 295)
Name: NF19346_low_12
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_12 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 27423075 - 27422797
Alignment:
| Q |
17 |
caatagccaagttttttaaattgcaaatgtttttaggatgtgaatgattagtgttggttctaaatggttctaacctttaaaatttatatagataaaagaa |
116 |
Q |
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| T |
27423075 |
caatagccaagtttttcaaattgcaaatgtttttaggatgtgaatgattagagttggttctaaatggttctaacctataaaatttatatagataaaagaa |
27422976 |
T |
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| Q |
117 |
ttttgagaaaccattggctacttgaattattagtggaagtatatactgtagtataggattaggatggagtcatagaaactacaaggagacaagagaaaat |
216 |
Q |
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| T |
27422975 |
ttttgagaaaccattggctacttgaattattagtggaagtatatactgtagtataggatcaggatggagtcatggaatctacaaggagacaagagcatat |
27422876 |
T |
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| Q |
217 |
ataagatcacatggtattgtcttagaggcctactctaccattcaatagacatatgcatggaagagaaagtttaattgac |
295 |
Q |
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| T |
27422875 |
ataagatcacatggtattgtcttagaggcctaccctaccataaaacagacctattcatggaatagaaagtttaattgac |
27422797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 48 - 295
Target Start/End: Complemental strand, 27412495 - 27412250
Alignment:
| Q |
48 |
tttaggatgtgaatgattagtgttggttctaaatggttctaacctttaaaatttatatagataaaagaattttgagaaaccattggctacttgaattatt |
147 |
Q |
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| T |
27412495 |
tttaggatgtgaatgatttgtgtttgtcctaaatgcttgcagccatgaatat--atatagataaaagaatattgagaaaccattggctacttgaatgatt |
27412398 |
T |
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| Q |
148 |
agtggaagtatatactgtagtataggattaggatggagtcatagaaactacaaggagacaagagaaaatataagatcacatggtattgtcttagaggcct |
247 |
Q |
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| T |
27412397 |
ggtggaggtttatactgtagtataggatcaggatggagtcatggaatctacaaggagacaagagcatatataagatcacatggtattgtcttagaggtct |
27412298 |
T |
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| Q |
248 |
actctaccattcaatagacatatgcatggaagagaaagtttaattgac |
295 |
Q |
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| T |
27412297 |
accctaccataaaacagacctattcatggaatagaaagtttaattgac |
27412250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 48 - 295
Target Start/End: Original strand, 27570367 - 27570613
Alignment:
| Q |
48 |
tttaggatgtgaatgattagtgttggttctaaatggttctaacctttaaaatttatatagataaaagaatt-ttgagaaaccattggctacttgaattat |
146 |
Q |
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| T |
27570367 |
tttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatat--atatagttaaaagaataattgagaaaccattggctacttgaatgat |
27570464 |
T |
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| Q |
147 |
tagtggaagtatatactgtagtataggattaggatggagtcatagaaactacaaggagacaagagaaaatataagatcacatggtattgtcttagaggcc |
246 |
Q |
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| T |
27570465 |
tggtggaggtatatactgtagtataggatcaggatggagtcatggaatctacaaggagacaagagcatatataagatcacatggtattgtcttagaggtc |
27570564 |
T |
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| Q |
247 |
tactctaccattcaatagacatatgcatggaagagaaagtttaattgac |
295 |
Q |
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| T |
27570565 |
taccctaccataaaacagacctattcatggaatagaaagtttaattgac |
27570613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 27566268 - 27566361
Alignment:
| Q |
48 |
tttaggatgtgaatgattagtgttggttctaaatggttctaacctttaaaatttatatagataaaagaattttgagaaaccattggctacttgaat |
143 |
Q |
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| T |
27566268 |
tttaggatgtgaatgatttgtgttggtcctaaatgcttgtaaccat--gaatatatatagataaaagaatattgaaaaactgttggctacttgaat |
27566361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 27415319 - 27415245
Alignment:
| Q |
165 |
tagtataggattaggatggagtcatagaaactacaaggagacaagagaaaatataagatcacatggtattgtctt |
239 |
Q |
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| T |
27415319 |
tagtataggattaggttggggacaaagaatatacaaagagacaagaggatatataagatcacatggtattgtctt |
27415245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 27425635 - 27425542
Alignment:
| Q |
48 |
tttaggatgtgaatgattagtgttggttctaaatggttctaacctttaaaatttatatagataaaagaattttgagaaaccattggctacttgaat |
143 |
Q |
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| T |
27425635 |
tttaggatgtgaatgatttgtgttggtcctaaatgcttgtagccttt--aatatatatagataagagaatatggaaaaactgttggctacttgaat |
27425542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 27420078 - 27420021
Alignment:
| Q |
185 |
gtcatagaaactacaaggagacaagagaaaatataagatcacatggtattgtcttaga |
242 |
Q |
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| T |
27420078 |
gtcaaagaatctacaaggaggcaagagcatatataagatcacatggtgttgtcttaga |
27420021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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