View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_18 (Length: 255)
Name: NF19346_low_18
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 41146594 - 41146752
Alignment:
| Q |
13 |
gcaaagggaagatatccataatggatgttgcccgtggtacaaggtaaatgacagttgggacgaggagtggagaagggaggaaaaaaccatttttaacaag |
112 |
Q |
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| T |
41146594 |
gcaaagggaagatatccataatggatgttgcccgtggtacaaggtaaatggcagtcgggacgaggagtggagaagggaggaaaaaaccatttttaacaag |
41146693 |
T |
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| Q |
113 |
ctgatagttgctgtcgtaagagttccacatggttcatttcattactcaagcctcgtcaa |
171 |
Q |
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| T |
41146694 |
ctgatagttgctgtcgtaagagttccacatggttcatttcattactcaagcctcgtcaa |
41146752 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 41146807 - 41146868
Alignment:
| Q |
194 |
gttctattccaaagtcaaatacctgccacaaacacaaacgctgtccagaaggggaagaaaaa |
255 |
Q |
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| T |
41146807 |
gttctattccaaagtcaaatacctgccacaaacacaaacgctgtccagaaggggaagaaaaa |
41146868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 41160649 - 41160706
Alignment:
| Q |
106 |
taacaagctgatagttgctgtcgtaagagttccacatggttcatttcattactcaagc |
163 |
Q |
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| T |
41160649 |
taacaagctgattgttgttctcacaggagttccacatagttcatttcattactcaagc |
41160706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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