View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_19 (Length: 254)
Name: NF19346_low_19
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 27570553 - 27570771
Alignment:
| Q |
18 |
gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
117 |
Q |
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| T |
27570553 |
gtcttagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
27570652 |
T |
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| Q |
118 |
gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttctt |
217 |
Q |
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| T |
27570653 |
gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttctt |
27570752 |
T |
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| Q |
218 |
gcctcctaacactgtctct |
236 |
Q |
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| T |
27570753 |
gcctcctaacactgtctct |
27570771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 27412310 - 27412166
Alignment:
| Q |
18 |
gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
117 |
Q |
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| T |
27412310 |
gtcttagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
27412211 |
T |
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| Q |
118 |
gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa |
162 |
Q |
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| T |
27412210 |
gtcctggtatgcaaatatcatggagttggtcttacaaaaataaaa |
27412166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27422857 - 27422677
Alignment:
| Q |
18 |
gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||| ||| ||| | ||||||| | |
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| T |
27422857 |
gtcttagaggcctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttcatatttgattaggatggcagggatcgcaaagtttt |
27422758 |
T |
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| Q |
118 |
gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaa |
201 |
Q |
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| T |
27422757 |
gttctggtatgcaaattttgtggagtctgtcatgcaaaaat---ataaaatgtggttcatagtggctcatgttcttgtgttcaa |
27422677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 27415176 - 27415068
Alignment:
| Q |
63 |
agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa |
162 |
Q |
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| T |
27415176 |
agaaagtttaattgaccttgatacttaattaagaaggcaaggaccgcaaacttctgtcctggtatgcaaatatcatgaagcttgtcttg---taataata |
27415080 |
T |
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| Q |
163 |
taaaatgtggtt |
174 |
Q |
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| T |
27415079 |
taaaatgtggtt |
27415068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 27425423 - 27425324
Alignment:
| Q |
60 |
aagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata |
159 |
Q |
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|||||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || | |||||||||||||||||||||| |||| ||||||||| |
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| T |
27425423 |
aagagaaagtttaattaaccttgttacttatttagcaaggcagggaccgcaaagttccgttcaggtatgcaaatatcatggagtttgtctggcaaaaata |
27425324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 27566449 - 27566595
Alignment:
| Q |
31 |
accctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgca |
130 |
Q |
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| T |
27566449 |
accccaccaaaaaacaggcctatcaatgcaagagaaagtttaattgaccatgttacttatttagcaatgcagggaccgcaaagttctgttatggtatgca |
27566548 |
T |
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| Q |
131 |
aatatcatggagttggtcttgcaaaaataaaataaaatgtggtttata |
178 |
Q |
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| T |
27566549 |
aatttaatggaatttgtcctg-aaaaactatataaaatgtggtttata |
27566595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 27419963 - 27419887
Alignment:
| Q |
63 |
agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatg |
139 |
Q |
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| T |
27419963 |
agaaagtttaattgaccttgatacttaattaagaaggcagggaccgcgaagttctgttctggtaagcaaatatcatg |
27419887 |
T |
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