View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_22 (Length: 228)
Name: NF19346_low_22
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 27422603 - 27422812
Alignment:
| Q |
15 |
atacatctcagatttttgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactat |
114 |
Q |
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| T |
27422603 |
atacatctcagatttgtgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactat |
27422702 |
T |
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| Q |
115 |
gaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27422703 |
gaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcgatccctgccatcctaatcaaatatgaaggtcaat |
27422802 |
T |
|
| Q |
215 |
taaactttct |
224 |
Q |
| |
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|||||||||| |
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| T |
27422803 |
taaactttct |
27422812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 27412058 - 27412265
Alignment:
| Q |
17 |
acatctcagatttttgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatga |
116 |
Q |
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|||||| |||||| |||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
27412058 |
acatcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggaggaaagaagcgaaccgatattgaacacaagaacttgagctactatga |
27412157 |
T |
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| Q |
117 |
accacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaatta |
216 |
Q |
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| T |
27412158 |
accaaattttttatttttgtaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaatta |
27412257 |
T |
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| Q |
217 |
aactttct |
224 |
Q |
| |
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|||||||| |
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| T |
27412258 |
aactttct |
27412265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 224
Target Start/End: Original strand, 27415010 - 27415176
Alignment:
| Q |
57 |
aacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaatt |
156 |
Q |
| |
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|||||||||||||||| | ||||||||| || |||||||||||| |||| ||| ||||||||||||||||||||| || || |||| || || | ||| |
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| T |
27415010 |
aacagtgtgaggaggaaa-aagagaaccaattttgaacacaagatcatgggcctctatgaaccacattttatattattacaagacaagcttcatgatatt |
27415108 |
T |
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| Q |
157 |
tgcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttct |
224 |
Q |
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| T |
27415109 |
tgcataccaggacagaagtttgcggtccttgccttcttaattaagtatcaaggtcaattaaactttct |
27415176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 27566638 - 27566478
Alignment:
| Q |
69 |
aggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatat--ttttgcatgacagactccacaaaatttgcataccag |
166 |
Q |
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|||| ||||||||||| |||| |||||||||| || | ||||||| ||||||||||||||| |||| || |||| | |||| |||||||||||||| |
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| T |
27566638 |
aggaaagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatatagtttttcaggacaaattccattaaatttgcataccat |
27566539 |
T |
|
| Q |
167 |
aacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttctctt |
227 |
Q |
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|||| ||||||||||||||||| | |||| || || | |||||||||||||||||||| |
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| T |
27566538 |
aacagaactttgcggtccctgcattgctaaataagtaacatggtcaattaaactttctctt |
27566478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 27425255 - 27425423
Alignment:
| Q |
59 |
cagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttg |
158 |
Q |
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|||||| ||||||| | | |||||| ||||||||||||||| || | |||| | |||||||| ||||||||||||| |||| |||||| | ||||| |
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| T |
27425255 |
cagtgttaggaggaaaaacgagaacaaatattgaacacaagatcacaaaccaccaggaaccacaatttatatttttgccagacaaactccatgatatttg |
27425354 |
T |
|
| Q |
159 |
cataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttctctt |
227 |
Q |
| |
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|||||| |||| |||||||||||||||||| | |||| || || ||||| |||||||||||||||| |
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| T |
27425355 |
catacctgaacggaactttgcggtccctgccttgctaaataagtaacaaggttaattaaactttctctt |
27425423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 27570736 - 27570598
Alignment:
| Q |
89 |
ttgaacacaagaacatgagccactatgaaccacattttat---atttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccc |
185 |
Q |
| |
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|||||| |||| |||||| || ||| ||||||||||||| ||||||||| ||| |||||| | ||||||||||||| ||| ||||||| ||||| |
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| T |
27570736 |
ttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtcct |
27570637 |
T |
|
| Q |
186 |
tgccatcctaatcaaatatgaaggtcaattaaactttct |
224 |
Q |
| |
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||| ||||||| || ||| ||||||||||||||||||| |
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| T |
27570636 |
tgcattcctaattaagtatcaaggtcaattaaactttct |
27570598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 27419893 - 27419963
Alignment:
| Q |
154 |
atttgcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttct |
224 |
Q |
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|||||| |||||||||| ||||| |||||||||||| || |||| || ||| ||||||||||||||||||| |
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| T |
27419893 |
atttgcttaccagaacagaacttcgcggtccctgccttcttaattaagtatcaaggtcaattaaactttct |
27419963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 27564095 - 27564028
Alignment:
| Q |
102 |
catgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaac |
169 |
Q |
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||||||||| |||||||||||||||||||||||||| |||| || ||| ||||| ||| |||||||| |
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| T |
27564095 |
catgagccattatgaaccacattttatatttttgcaagacaaaccccatgaaattcgcacaccagaac |
27564028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 27571007 - 27570928
Alignment:
| Q |
59 |
cagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcat |
138 |
Q |
| |
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|||||| |||||| ||||||||||| ||||| ||| ||||| || | | |||||||||||| |||||||||||||||| |
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| T |
27571007 |
cagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatatttttgcat |
27570928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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