View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_23 (Length: 218)
Name: NF19346_low_23
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_23 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 40669966 - 40669779
Alignment:
| Q |
34 |
tcttcatcatatgctctaactagtacggtatttaatgtatttctttgccttgattagaatttgctagtaagtgcttaattaaatacctaa---tannnnn |
130 |
Q |
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| T |
40669966 |
tcttcatcatatgctctaactagtacggtatttaatgtatttctttgccttgattagaatttgctagtaagtgcttaattaaatacctaatttttttttc |
40669867 |
T |
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| Q |
131 |
nnnccaaaatgctcaaaatttcatatgtaatgacgaaccaaactagcgagcacatgtccatcactatcaactaccttcatttgtaaac |
218 |
Q |
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| T |
40669866 |
tttccaaaatgctcaaaatttcatatgtaatgacgaaccaaactagcgagcacatgtccatcactatcaactaccttcatttgtaaac |
40669779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 40663509 - 40663465
Alignment:
| Q |
80 |
gccttgattagaatttgctagtaagtgcttaattaaatacctaat |
124 |
Q |
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| T |
40663509 |
gccttgatcagcatttgctagtaagtgcttaattaatttcctaat |
40663465 |
T |
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