View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_24 (Length: 213)
Name: NF19346_low_24
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 5809532 - 5809352
Alignment:
| Q |
18 |
agtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattc |
117 |
Q |
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| T |
5809532 |
agtaaccatgtaattttagcgtagaacttgccttatggtgccaccgaaaatgaacttgcaaagattttggggaaatttggtagtttggataaaataattc |
5809433 |
T |
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| Q |
118 |
tcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtctatgtattttctttattttg |
196 |
Q |
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| T |
5809432 |
tcgcctcgacaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtctatgtattttctttattttg |
5809352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 37754963 - 37754793
Alignment:
| Q |
18 |
agtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattc |
117 |
Q |
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| T |
37754963 |
agtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttgggaaatttggtagtttggataaaataattc |
37754864 |
T |
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| Q |
118 |
tcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
186 |
Q |
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| T |
37754863 |
tcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37754793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 37760937 - 37760767
Alignment:
| Q |
18 |
agtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattc |
117 |
Q |
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| T |
37760937 |
agtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttgggaaatttggtagtttggataaaataattc |
37760838 |
T |
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| Q |
118 |
tcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
186 |
Q |
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| T |
37760837 |
tcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37760767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 37739111 - 37738980
Alignment:
| Q |
18 |
agtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattc |
117 |
Q |
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| T |
37739111 |
agtaaccatgtacttttagcgaaaaatttgccatatggtgctacggaaaatgatcttgcaaagatgtttgggaaatttggtagtttggataaaataattc |
37739012 |
T |
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| Q |
118 |
tcgcct--acaaaaacattggccttggtattt |
147 |
Q |
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| T |
37739011 |
tgccctcgacaaaaacattggccctggtattt |
37738980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 38605740 - 38605875
Alignment:
| Q |
18 |
agtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattc |
117 |
Q |
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|||||||||||| ||||||| || || ||||| |||||||| || ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
38605740 |
agtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcagagatgtttgggaaatttggtagtttggataaaataattc |
38605839 |
T |
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| Q |
118 |
tcgcct--acaaaaacattggccttggtatttttcc |
151 |
Q |
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|| ||| |||| |||||||||| |||||||||||| |
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| T |
38605840 |
tcccctcgacaagaacattggccctggtatttttcc |
38605875 |
T |
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