View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19346_low_3 (Length: 663)

Name: NF19346_low_3
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19346_low_3
NF19346_low_3
[»] chr4 (16 HSPs)
chr4 (18-663)||(27570553-27571197)
chr4 (18-162)||(27412166-27412310)
chr4 (18-201)||(27422677-27422857)
chr4 (63-283)||(27414963-27415176)
chr4 (242-398)||(27419680-27419832)
chr4 (60-394)||(27425100-27425423)
chr4 (31-178)||(27566449-27566595)
chr4 (63-139)||(27419887-27419963)
chr4 (395-511)||(27425216-27425332)
chr4 (428-524)||(27414960-27415055)
chr4 (552-661)||(27419645-27419754)
chr4 (393-474)||(27422645-27422726)
chr4 (401-458)||(27566577-27566634)
chr4 (259-321)||(27422579-27422641)
chr4 (592-654)||(27425068-27425130)
chr4 (346-387)||(27412020-27412061)


Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 18 - 663
Target Start/End: Original strand, 27570553 - 27571197
Alignment:
Q  18 gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570553 gtcttagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct 27570652  T
Q  118 gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570653 gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttctt 27570752  T
Q  218 gcctcctaacactgtctcttagctgctaacaattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570753 gcctcctaacactgtctcttagctgctaacaattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatatt 27570852  T
Q  318 agctgcattgtcaattcgaagaaattacatgtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaaaaatataaaacgtggttca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570853 agctgcattgtcaattcgaagaaattacatgtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaaaaatataaaacgtggttca 27570952  T
Q  418 tagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgtttctgatctataattcaggtcctactcatgatttacaaattgca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  27570953 tagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgcttctgatctataattcaggtcctactcatgatttacaaattgaa 27571052  T
Q  518 gatatatcagataatagttggctgatgtatattgtgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactatacc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27571053 gatatatcagataatagttggctgatgtatattgtgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactat-cc 27571151  T
Q  618 aaaatgcattaacaaacatcaggtctttttcaccaatgcattgttt 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27571152 aaaatgcattaacaaacatcaggtctttttcaccaatgcattgttt 27571197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 27412310 - 27412166
Alignment:
Q  18 gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27412310 gtcttagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct 27412211  T
Q  118 gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa 162  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  27412210 gtcctggtatgcaaatatcatggagttggtcttacaaaaataaaa 27412166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27422857 - 27422677
Alignment:
Q  18 gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |||||||  ||| ||| | ||||||| |    
T  27422857 gtcttagaggcctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttcatatttgattaggatggcagggatcgcaaagtttt 27422758  T
Q  118 gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaa 201  Q
    || ||||||||||||| |  ||||||  ||| |||||||||   ||||||||||||| ||| || ||||||  |||| ||||||    
T  27422757 gttctggtatgcaaattttgtggagtctgtcatgcaaaaat---ataaaatgtggttcatagtggctcatgttcttgtgttcaa 27422677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 63 - 283
Target Start/End: Complemental strand, 27415176 - 27414963
Alignment:
Q  63 agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa 162  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||| || | ||||||    ||||| |    
T  27415176 agaaagtttaattgaccttgatacttaattaagaaggcaaggaccgcaaacttctgtcctggtatgcaaatatcatgaagcttgtcttg---taataata 27415080  T
Q  163 taaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttcttgcctcctaacactgtctcttagctgctaacaattaggtcctacac 262  Q
    |||||||||||| |||  | | ||||| |||| |||||| |||  || |||| || |||||| ||||||| ||| |   ||||  ||| ||||||||| |    
T  27415079 taaaatgtggttcatagaggcccatgatcttgtgttcaaaattggttctctt-tttcctcctcacactgtttctga---gctataaatcaggtcctactc 27414984  T
Q  263 aagctttacaagttgcacata 283  Q
    |||||||||||||||||||||    
T  27414983 aagctttacaagttgcacata 27414963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 242 - 398
Target Start/End: Complemental strand, 27419832 - 27419680
Alignment:
Q  242 gctaacaattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaa 341  Q
    |||| |||| ||||||||||||| ||| | ||||| ||||||||| |||||||||||||  ||||||||||||||| |||||| |||||||| ||||||     
T  27419832 gctatcaatcaggtcctacacaacctt-ataagtttcacataaatatgatatatattcagttggtagatgtatatttgctgcaatgtcaattagaagaa- 27419735  T
Q  342 ttacatgtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaa 398  Q
      |||||||||||||| | ||||||||||| |||||||||  |||| | ||||||||    
T  27419734 --acatgtgagatgtctaaagcatgtctacaattggattatctatacccaaatgcaa 27419680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 60 - 394
Target Start/End: Complemental strand, 27425423 - 27425100
Alignment:
Q  60 aagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata 159  Q
    |||||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || | |||||||||||||||||||||| |||| ||||||||     
T  27425423 aagagaaagtttaattaaccttgttacttatttagcaaggcagggaccgcaaagttccgttcaggtatgcaaatatcatggagtttgtctggcaaaaat- 27425325  T
Q  160 aaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttcttgcctcctaacactgtctcttagctgctaacaattaggtccta 259  Q
      ||||| |||||||  |  ||  |  ||| |||| |||||| |||  || || | || |||||||||||||  ||| |    |||  ||| ||||||||    
T  27425324 --ataaattgtggttcctggtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctga---actataaatcaggtccta 27425230  T
Q  260 cacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacatgtgagatgtcga 359  Q
    | |||||||||||||| |||||||||| ||  || |||| |  ||||| ||||||||||| | | ||||||||| ||||||   | |||||||||||| |    
T  27425229 cgcaagctttacaagtggcacataaatatg--atttatttagctggtatatgtatattagtttccttgtcaattagaagaa---agatgtgagatgtcta 27425135  T
Q  360 gagcatgtctaccattggattagttataacaaaat 394  Q
     | |||||||||||||| ||||| |||| ||||||    
T  27425134 aaccatgtctaccattgcattagctataccaaaat 27425100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 27566449 - 27566595
Alignment:
Q  31 accctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgca 130  Q
    |||| |||| ||||||| |||||  ||| |||||||||||||||||||| || |||||| |||| |||||| ||||| |||||||||||  |||||||||    
T  27566449 accccaccaaaaaacaggcctatcaatgcaagagaaagtttaattgaccatgttacttatttagcaatgcagggaccgcaaagttctgttatggtatgca 27566548  T
Q  131 aatatcatggagttggtcttgcaaaaataaaataaaatgtggtttata 178  Q
    ||| | ||||| || ||| || |||||  | |||||||||||||||||    
T  27566549 aatttaatggaatttgtcctg-aaaaactatataaaatgtggtttata 27566595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 27419963 - 27419887
Alignment:
Q  63 agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatg 139  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||||| |||||| ||||||||||||    
T  27419963 agaaagtttaattgaccttgatacttaattaagaaggcagggaccgcgaagttctgttctggtaagcaaatatcatg 27419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 395 - 511
Target Start/End: Complemental strand, 27425332 - 27425216
Alignment:
Q  395 gcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgtttctgatctataattcaggtc 494  Q
    |||||||||||||  ||||||| | || ||||||||||||| ||| |||||| |||||| | || ||||||||||||| |||||| |||||| |||||||    
T  27425332 gcaaaaatataaattgtggttcctggtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctgaactataaatcaggtc 27425233  T
Q  495 ctactcatgatttacaa 511  Q
    |||| || | |||||||    
T  27425232 ctacgcaagctttacaa 27425216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 428 - 524
Target Start/End: Complemental strand, 27415055 - 27414960
Alignment:
Q  428 tgatcttgcgtttaatattggttctcttcttgcctcctaacactgtttctgatctataattcaggtcctactcatgatttacaaattgcagatatat 524  Q
    |||||||| ||| || |||||||||||| || |||||| ||||||||||||| |||||| |||||||||||||| | ||||||| ||||| ||||||    
T  27415055 tgatcttgtgttcaaaattggttctcttttt-cctcctcacactgtttctgagctataaatcaggtcctactcaagctttacaagttgcacatatat 27414960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 661
Target Start/End: Complemental strand, 27419754 - 27419645
Alignment:
Q  552 tgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcacc 651  Q
    |||| |||||||  ||||||||||| || ||||||  || |||||||| | ||||| | ||||||| |||||||  || ||||||||||| | |||||||    
T  27419754 tgcaatgtcaattagaagaaacatgtgagatgtctaaagcatgtctacaattggattatctatacccaaatgcaagaaaaaacatcaggtttctttcacc 27419655  T
Q  652 aatgcattgt 661  Q
    | ||||||||    
T  27419654 attgcattgt 27419645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 474
Target Start/End: Complemental strand, 27422726 - 27422645
Alignment:
Q  393 atgcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgtt 474  Q
    |||||||||||||||| |||||||||||| | |  || ||||| ||| ||||| |||||||||||  |||||| ||||||||    
T  27422726 atgcaaaaatataaaatgtggttcatagtggctcatgttcttgtgttcaatatcggttctcttctctcctcctcacactgtt 27422645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 27566577 - 27566634
Alignment:
Q  401 atataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttctt 458  Q
    |||||||| |||||| ||||| ||||||||||||| |||  |||||||||||||||||    
T  27566577 atataaaatgtggtttatagtggtttgtgatcttgtgttctatattggttctcttctt 27566634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 27422641 - 27422579
Alignment:
Q  259 acacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagct 321  Q
    |||||||| | |||||||||||| |||||||| || |||| |  |||||||||||||||||||    
T  27422641 acacaagcctaacaagttgcacacaaatctgagatgtatttagctggtagatgtatattagct 27422579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 654
Target Start/End: Complemental strand, 27425130 - 27425068
Alignment:
Q  592 atgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcaccaat 654  Q
    |||||||||| || || | |||||||||||| || ||||||||||||||| | ||||||||||    
T  27425130 atgtctaccattgcattagctataccaaaattcaataacaaacatcaggtttctttcaccaat 27425068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 27412061 - 27412020
Alignment:
Q  346 atgtgagatgtcgagagcatgtctaccattggattagttata 387  Q
    |||||||||||| | |||||||||||||||||||||| ||||    
T  27412061 atgtgagatgtctaaagcatgtctaccattggattagctata 27412020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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