View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_6 (Length: 493)
Name: NF19346_low_6
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 8403320 - 8403091
Alignment:
| Q |
19 |
gttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaacaaaaaa--tgtcatattcacatgaatcttgga |
116 |
Q |
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| T |
8403320 |
gttgacgcaacccggatagggaaatattctccatgatatgaacaaaa-tgatgtatcccctaattaacaaaaaaaatgccatattcacatgaatcttgga |
8403222 |
T |
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| Q |
117 |
aatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgacgataaacattatattttgcctgcattgc |
216 |
Q |
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| T |
8403221 |
aatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgacgataaccattatcttttgcctccattgc |
8403122 |
T |
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| Q |
217 |
aatttgagaattttaattcattattgagcaa |
247 |
Q |
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| T |
8403121 |
aatttgagaattttaattcattattgagcaa |
8403091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 306 - 481
Target Start/End: Complemental strand, 8402635 - 8402461
Alignment:
| Q |
306 |
tatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggttaaaa |
405 |
Q |
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| T |
8402635 |
tatcccaaattacccatgttcataggggatattggggaatcgagcattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggtt-aaa |
8402537 |
T |
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| Q |
406 |
atgagtttatcacaggttctttaaccaagaatgcaatatcatggatcttctattcactcattgactcggttagaat |
481 |
Q |
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| T |
8402536 |
atgagtttatcacaggttctttaaccaagaatgcaatatcatggctcttctattcactcattgactcggttagaat |
8402461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 278 - 449
Target Start/End: Complemental strand, 8428796 - 8428626
Alignment:
| Q |
278 |
acatattgaagtcccaagaggcgctaaatatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccaca |
377 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| || |||||||||||||||||||| |
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| T |
8428796 |
acatgttgaagtcccaagaggcgctaaatatcccaaattggccatgttcataggggatattggggaatcaatcattaaacacattgcaaaattctccaca |
8428697 |
T |
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| Q |
378 |
aaaatatgggaatttgcaatggttaaaaatgagtttatcacaggttctttaaccaagaatgcaatatcatgg |
449 |
Q |
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| T |
8428696 |
aaaatatgggaatttgcaatagtt-aaaatgagtttatcccaagttctttaaccaagaatgcattctcatgg |
8428626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 8429198 - 8428991
Alignment:
| Q |
20 |
ttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaacaaaaaatgtcatattca----catgaatcttgg |
115 |
Q |
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| T |
8429198 |
ttgacacaacctggatagggaaacactctccaggata---acaaaa-tcatttatcccctaattgacgaaaaatgccatattcatatgcatgaatcttgg |
8429103 |
T |
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| Q |
116 |
aaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgacgataaacattatattttgcctgcattg |
215 |
Q |
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| T |
8429102 |
gaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatagttctaaaatgccaatctcgacattaaccattatcgtttgccaccattg |
8429003 |
T |
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| Q |
216 |
caatttgagaat |
227 |
Q |
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|||| ||||||| |
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| T |
8429002 |
caatatgagaat |
8428991 |
T |
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