View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19346_low_7 (Length: 481)
Name: NF19346_low_7
Description: NF19346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19346_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 27570553 - 27570964
Alignment:
| Q |
18 |
gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27570553 |
gtcttagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
27570652 |
T |
|
| Q |
118 |
gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27570653 |
gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttctt |
27570752 |
T |
|
| Q |
218 |
gcctcctaacactgtctcttagctgctaacaattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27570753 |
gcctcctaacactgtctcttagctgctaacaattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatatt |
27570852 |
T |
|
| Q |
318 |
agctgcattgtcaattcgaagaaattacatgtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaaaaatataaaacgtggttca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27570853 |
agctgcattgtcaattcgaagaaattacatgtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaaaaatataaaacgtggttca |
27570952 |
T |
|
| Q |
418 |
tagtcgtctgtg |
429 |
Q |
| |
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||||||| |||| |
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| T |
27570953 |
tagtcgtttgtg |
27570964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 27412310 - 27412166
Alignment:
| Q |
18 |
gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27412310 |
gtcttagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
27412211 |
T |
|
| Q |
118 |
gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa |
162 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27412210 |
gtcctggtatgcaaatatcatggagttggtcttacaaaaataaaa |
27412166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27422857 - 27422677
Alignment:
| Q |
18 |
gtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttct |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||| ||| ||| | ||||||| | |
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| T |
27422857 |
gtcttagaggcctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttcatatttgattaggatggcagggatcgcaaagtttt |
27422758 |
T |
|
| Q |
118 |
gtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaa |
201 |
Q |
| |
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|| ||||||||||||| | |||||| ||| ||||||||| ||||||||||||| ||| || |||||| |||| |||||| |
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| T |
27422757 |
gttctggtatgcaaattttgtggagtctgtcatgcaaaaat---ataaaatgtggttcatagtggctcatgttcttgtgttcaa |
27422677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 63 - 283
Target Start/End: Complemental strand, 27415176 - 27414963
Alignment:
| Q |
63 |
agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||| || | |||||| ||||| | |
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| T |
27415176 |
agaaagtttaattgaccttgatacttaattaagaaggcaaggaccgcaaacttctgtcctggtatgcaaatatcatgaagcttgtcttg---taataata |
27415080 |
T |
|
| Q |
163 |
taaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttcttgcctcctaacactgtctcttagctgctaacaattaggtcctacac |
262 |
Q |
| |
|
|||||||||||| ||| | | ||||| |||| |||||| ||| || |||| || |||||| ||||||| ||| | |||| ||| ||||||||| | |
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| T |
27415079 |
taaaatgtggttcatagaggcccatgatcttgtgttcaaaattggttctctt-tttcctcctcacactgtttctga---gctataaatcaggtcctactc |
27414984 |
T |
|
| Q |
263 |
aagctttacaagttgcacata |
283 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
27414983 |
aagctttacaagttgcacata |
27414963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 398
Target Start/End: Complemental strand, 27419832 - 27419680
Alignment:
| Q |
242 |
gctaacaattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaa |
341 |
Q |
| |
|
|||| |||| ||||||||||||| ||| | ||||| ||||||||| ||||||||||||| ||||||||||||||| |||||| |||||||| |||||| |
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| T |
27419832 |
gctatcaatcaggtcctacacaacctt-ataagtttcacataaatatgatatatattcagttggtagatgtatatttgctgcaatgtcaattagaagaa- |
27419735 |
T |
|
| Q |
342 |
ttacatgtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaa |
398 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||| |||| | |||||||| |
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|
| T |
27419734 |
--acatgtgagatgtctaaagcatgtctacaattggattatctatacccaaatgcaa |
27419680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 394
Target Start/End: Complemental strand, 27425423 - 27425100
Alignment:
| Q |
60 |
aagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata |
159 |
Q |
| |
|
|||||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || | |||||||||||||||||||||| |||| |||||||| |
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| T |
27425423 |
aagagaaagtttaattaaccttgttacttatttagcaaggcagggaccgcaaagttccgttcaggtatgcaaatatcatggagtttgtctggcaaaaat- |
27425325 |
T |
|
| Q |
160 |
aaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttcttgcctcctaacactgtctcttagctgctaacaattaggtccta |
259 |
Q |
| |
|
||||| ||||||| | || | ||| |||| |||||| ||| || || | || ||||||||||||| ||| | ||| ||| |||||||| |
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|
| T |
27425324 |
--ataaattgtggttcctggtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctga---actataaatcaggtccta |
27425230 |
T |
|
| Q |
260 |
cacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacatgtgagatgtcga |
359 |
Q |
| |
|
| |||||||||||||| |||||||||| || || |||| | ||||| ||||||||||| | | ||||||||| |||||| | |||||||||||| | |
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|
| T |
27425229 |
cgcaagctttacaagtggcacataaatatg--atttatttagctggtatatgtatattagtttccttgtcaattagaagaa---agatgtgagatgtcta |
27425135 |
T |
|
| Q |
360 |
gagcatgtctaccattggattagttataacaaaat |
394 |
Q |
| |
|
| |||||||||||||| ||||| |||| |||||| |
|
|
| T |
27425134 |
aaccatgtctaccattgcattagctataccaaaat |
27425100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 27566449 - 27566595
Alignment:
| Q |
31 |
accctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgca |
130 |
Q |
| |
|
|||| |||| ||||||| ||||| ||| |||||||||||||||||||| || |||||| |||| |||||| ||||| ||||||||||| ||||||||| |
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|
| T |
27566449 |
accccaccaaaaaacaggcctatcaatgcaagagaaagtttaattgaccatgttacttatttagcaatgcagggaccgcaaagttctgttatggtatgca |
27566548 |
T |
|
| Q |
131 |
aatatcatggagttggtcttgcaaaaataaaataaaatgtggtttata |
178 |
Q |
| |
|
||| | ||||| || ||| || ||||| | ||||||||||||||||| |
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|
| T |
27566549 |
aatttaatggaatttgtcctg-aaaaactatataaaatgtggtttata |
27566595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 27419963 - 27419887
Alignment:
| Q |
63 |
agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatg |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||||| |||||| |||||||||||| |
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|
| T |
27419963 |
agaaagtttaattgaccttgatacttaattaagaaggcagggaccgcgaagttctgttctggtaagcaaatatcatg |
27419887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 27422641 - 27422579
Alignment:
| Q |
259 |
acacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagct |
321 |
Q |
| |
|
|||||||| | |||||||||||| |||||||| || |||| | ||||||||||||||||||| |
|
|
| T |
27422641 |
acacaagcctaacaagttgcacacaaatctgagatgtatttagctggtagatgtatattagct |
27422579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 27412061 - 27412020
Alignment:
| Q |
346 |
atgtgagatgtcgagagcatgtctaccattggattagttata |
387 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
27412061 |
atgtgagatgtctaaagcatgtctaccattggattagctata |
27412020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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