View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19347_high_1 (Length: 782)

Name: NF19347_high_1
Description: NF19347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19347_high_1
NF19347_high_1
[»] chr4 (7 HSPs)
chr4 (228-766)||(4456051-4456600)
chr4 (25-187)||(4455848-4456010)
chr4 (544-757)||(55150416-55150637)
chr4 (544-735)||(13773750-13773954)
chr4 (640-749)||(29827601-29827711)
chr4 (544-606)||(29827502-29827566)
chr4 (617-667)||(19192592-19192642)
[»] chr7 (1 HSPs)
chr7 (551-749)||(2941377-2941588)
[»] scaffold0445 (1 HSPs)
scaffold0445 (611-707)||(10788-10884)
[»] chr8 (2 HSPs)
chr8 (611-745)||(29209880-29210013)
chr8 (619-672)||(21237326-21237379)
[»] chr5 (2 HSPs)
chr5 (618-701)||(7881887-7881970)
chr5 (544-603)||(7881996-7882057)
[»] chr6 (1 HSPs)
chr6 (619-681)||(17344768-17344830)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 228 - 766
Target Start/End: Original strand, 4456051 - 4456600
Alignment:
Q  228 caattacacttgcacctaatcttaattaatcacgtccttagattggattcttgaaccacaacaagaaaagnnnnnnnnntgaaatcagccctatttctct 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||    
T  4456051 caattacacttgcacctaatcttaattaatcacgtccttagattggattcttgaaccacaacaagaaga---aaaaaaatgaaatcagccctatttctct 4456147  T
Q  328 tgttatgaaatttattgagttatttatga--------catattctctcaaaatcaccgtcacttattcnnnnnnnctctctaatgaagattttgcatata 419  Q
    ||||||||||||||||||||||||||| |        ||||||||||||||||  |||||||||||||       |||||||||||||||||||||||||    
T  4456148 tgttatgaaatttattgagttatttataaacgaattccatattctctcaaaatttccgtcacttattctttttttctctctaatgaagattttgcatata 4456247  T
Q  420 aactacaacatgttgaattggctatactccaaatgcaatttgagccacaaattaataatgttgtnnnnnnnnnnnnngt--tttttatatagacaaatgt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||              |  |||||||||||||||||||    
T  4456248 aactacaacatgttgaattggctatactccaaatgcaatttgagccacaaattgataatgttgttctctctctctctttattttttatatagacaaatgt 4456347  T
Q  518 ttcttttaactttgtgctattatg--taggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagcgacaaaac 613  Q
    |||||||||||||||||||||  |  ||||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| ||||||    
T  4456348 ttcttttaactttgtgctattcagcttaggattactacttgttatgatcttagatatacatgtatcatttgtgagaatgattgtttagaagcggcaaaac 4456447  T
Q  614 ttagaaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagc 713  Q
    ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||| |||||||||||| |||||    
T  4456448 ttaaaaaatgcaagtttgcatgtgtatgcatcggtgttattagaaatcttggatgtcttacatcatgagactgtaaatttaattcatattttgaggaagc 4456547  T
Q  714 aaaatatttgtgctgactttatagctaaggaggctttttattccacctattca 766  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  4456548 aaaatatttgtgctgactttataactaaggaggctttttattccgcctattca 4456600  T

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Target: chr4; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 4455848 - 4456010
Alignment:
Q  25 gtgaccatctttttaacacaaatgttggtgagctggtgttagagtacagtttcgggtgagcaaaaaggttatggatccatttttgaagttgttatattat 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4455848 gtgaccatctctttaacacaaatgttggtgagctggtgttagagtacagtttctggtgagcaaaaaggttatggatccatttttgaagttgttatattat 4455947  T
Q  125 tgtagaaggtaattcttgtgcttcaagaatcttgttatataaatacttctttttccgttgaat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4455948 tgtagaaggtaattcttgtgcttcaagaatcttgttatataaatacttctttttccgttgaat 4456010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 544 - 757
Target Start/End: Original strand, 55150416 - 55150637
Alignment:
Q  544 ggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagcgacaaaacttag-----------aaaatgcaagttt 630  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||   || ||||            |||||||||||||    
T  55150416 ggattgctacttgttatgatcttggatatacaagcatcatttgtgagagtgattgtttagaagcggtgaatcttattcacaatatgaaaaatgcaagttt 55150515  T
Q  631 gcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgac 730  Q
    |||||||||||||| |||||||||||||||||  |||| |||||| ||| |     ||||||||||||||||||||| | |||| || ||||||||||||    
T  55150516 gcatgtgtatgcatttgtgttactagaaatctcagatgccttacatcatta-----taaatttagttcatattttgagggagcagaacatttgtgctgac 55150610  T
Q  731 tttatagctaaggaggctttttattcc 757  Q
    ||||| ||||||||||||| |||||||    
T  55150611 tttatggctaaggaggcttcttattcc 55150637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 544 - 735
Target Start/End: Original strand, 13773750 - 13773954
Alignment:
Q  544 ggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagcgacaaaactta-----------gaaaatgcaagttt 630  Q
    |||||||||||| |||||||||| ||||||||   ||||||||||| ||||||| ||||||||||   || ||||           ||||||||||||||    
T  13773750 ggattgctactttttatgatcttggatatacaagcatcatttgtgaaagtgattatttagaagcggtgaatcttattcagaatttggaaaatgcaagttt 13773849  T
Q  631 gcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgac 730  Q
    ||||||||||| ||||||||||||| ||||||  |||||||| || |||  || ||||||||||||||||||||||| | ||| ||| |||||||||||     
T  13773850 gcatgtgtatgtatctgtgttactaaaaatctaagatgtcttgcatcattggactgtaaatttagttcatattttgagggagcgaaacatttgtgctgat 13773949  T
Q  731 tttat 735  Q
    |||||    
T  13773950 tttat 13773954  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 640 - 749
Target Start/End: Original strand, 29827601 - 29827711
Alignment:
Q  640 tgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgac-tttatagc 738  Q
    ||||||||||||| ||||||||| | |||  ||||| | ||||| ||||||||||||||||||||| | | | ||||| |||||||||||| |||||  |    
T  29827601 tgcatctgtgttattagaaatctcgaatgcattacatcgtgagactgtaaatttagttcatattttaagggaacaaaacatttgtgctgacttttatgac 29827700  T
Q  739 taaggaggctt 749  Q
    |||||||||||    
T  29827701 taaggaggctt 29827711  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 606
Target Start/End: Original strand, 29827502 - 29827566
Alignment:
Q  544 ggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagcg 606  Q
    ||||||||||||||||||||||| ||||| ||   ||||||||||||||||||||||||||||||    
T  29827502 ggattgctacttgttatgatcttggatatgcaagcatcatttgtgagagtgattgtttagaagcg 29827566  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 667
Target Start/End: Complemental strand, 19192642 - 19192592
Alignment:
Q  617 gaaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggat 667  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||| ||||    
T  19192642 gaaaatgcaagtttgcatgtgtatgcctctatcttactagaaatctcggat 19192592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 551 - 749
Target Start/End: Complemental strand, 2941588 - 2941377
Alignment:
Q  551 tacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagc---ga--------caaaacttagaaaatgcaagtttgcatgtg 637  Q
    ||||||||| |||||| ||||||||   |||||||||||||||||||| ||||||||   ||        |||||||| |||||||||||||| ||||||    
T  2941588 tacttgttacgatcttggatatacaagcatcatttgtgagagtgattgcttagaagctgtgaatcttattcaaaacttggaaaatgcaagttttcatgtg 2941489  T
Q  638 tatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgactttatag 737  Q
    ||||||| || |||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||| | |||| || ||||||||||| ||||| |    
T  2941488 tatgcatttgcgttactagaaatctcggatgccttacatcatgagactgtaaatttagttcatattttgagggagcagaacatttgtgctgattttatgg 2941389  T
Q  738 ctaaggaggctt 749  Q
    |||| |||||||    
T  2941388 ctaaagaggctt 2941377  T

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Target: scaffold0445 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 611 - 707
Target Start/End: Complemental strand, 10884 - 10788
Alignment:
Q  611 aacttagaaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttga 707  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||  ||| || | ||||||||||| |||||||||    
T  10884 aacttggaaaatgcaagtttgcatgtgtatgcatatgtgttactagaaatatcggatgccttacataatgggactataaatttagttaatattttga 10788  T

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Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 611 - 745
Target Start/End: Original strand, 29209880 - 29210013
Alignment:
Q  611 aacttagaaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaaga 710  Q
    ||||| |||||||||||||||||| |  |||| | |||| |||||||||||| ||||| ||| || |||| || |||||||| |||||||||| ||| |     
T  29209880 aacttggaaaatgcaagtttgcattttcatgcttatgtgctactagaaatctcggatgccttgcatcatg-gactgtaaattcagttcatattatgaggg 29209978  T
Q  711 agcaaaatatttgtgctgactttatagctaaggag 745  Q
    |||| || ||||||||||||||||| |||||||||    
T  29209979 agcagaacatttgtgctgactttatggctaaggag 29210013  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 672
Target Start/End: Original strand, 21237326 - 21237379
Alignment:
Q  619 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtctt 672  Q
    ||||| |||||||||||||||||  |||||||| ||||||||||  ||||||||    
T  21237326 aaatgtaagtttgcatgtgtatgtctctgtgttgctagaaatctcagatgtctt 21237379  T

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Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 7881970 - 7881887
Alignment:
Q  618 aaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcata 701  Q
    ||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || ||||||| |||||||||||||||||    
T  7881970 aaaatacaagtttacatgtatatgcctctgtgttactagaaatctcggatgccttgcatcatgagactgtaaatttagttcata 7881887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 603
Target Start/End: Complemental strand, 7882057 - 7881996
Alignment:
Q  544 ggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaa 603  Q
    ||||||||||||| ||||||||| | ||||||   || ||||||||||||||||||||||||    
T  7882057 ggattgctacttgatatgatcttggttatacaagcattatttgtgagagtgattgtttagaa 7881996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 681
Target Start/End: Original strand, 17344768 - 17344830
Alignment:
Q  619 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatga 681  Q
    ||||| |||||||||  ||||||||||| |||||||||||||||  |||| ||| ||||||||    
T  17344768 aaatgtaagtttgcaaatgtatgcatctatgttactagaaatctcagatgccttgcaacatga 17344830  T

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