View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19347_low_1 (Length: 782)
Name: NF19347_low_1
Description: NF19347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19347_low_1 |
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| [»] scaffold0445 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 228 - 766
Target Start/End: Original strand, 4456051 - 4456600
Alignment:
| Q |
228 |
caattacacttgcacctaatcttaattaatcacgtccttagattggattcttgaaccacaacaagaaaagnnnnnnnnntgaaatcagccctatttctct |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
4456051 |
caattacacttgcacctaatcttaattaatcacgtccttagattggattcttgaaccacaacaagaaga---aaaaaaatgaaatcagccctatttctct |
4456147 |
T |
|
| Q |
328 |
tgttatgaaatttattgagttatttatga--------catattctctcaaaatcaccgtcacttattcnnnnnnnctctctaatgaagattttgcatata |
419 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
4456148 |
tgttatgaaatttattgagttatttataaacgaattccatattctctcaaaatttccgtcacttattctttttttctctctaatgaagattttgcatata |
4456247 |
T |
|
| Q |
420 |
aactacaacatgttgaattggctatactccaaatgcaatttgagccacaaattaataatgttgtnnnnnnnnnnnnngt--tttttatatagacaaatgt |
517 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
4456248 |
aactacaacatgttgaattggctatactccaaatgcaatttgagccacaaattgataatgttgttctctctctctctttattttttatatagacaaatgt |
4456347 |
T |
|
| Q |
518 |
ttcttttaactttgtgctattatg--taggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagcgacaaaac |
613 |
Q |
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||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |
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| T |
4456348 |
ttcttttaactttgtgctattcagcttaggattactacttgttatgatcttagatatacatgtatcatttgtgagaatgattgtttagaagcggcaaaac |
4456447 |
T |
|
| Q |
614 |
ttagaaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagc |
713 |
Q |
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||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||| |
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| T |
4456448 |
ttaaaaaatgcaagtttgcatgtgtatgcatcggtgttattagaaatcttggatgtcttacatcatgagactgtaaatttaattcatattttgaggaagc |
4456547 |
T |
|
| Q |
714 |
aaaatatttgtgctgactttatagctaaggaggctttttattccacctattca |
766 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
4456548 |
aaaatatttgtgctgactttataactaaggaggctttttattccgcctattca |
4456600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 4455848 - 4456010
Alignment:
| Q |
25 |
gtgaccatctttttaacacaaatgttggtgagctggtgttagagtacagtttcgggtgagcaaaaaggttatggatccatttttgaagttgttatattat |
124 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4455848 |
gtgaccatctctttaacacaaatgttggtgagctggtgttagagtacagtttctggtgagcaaaaaggttatggatccatttttgaagttgttatattat |
4455947 |
T |
|
| Q |
125 |
tgtagaaggtaattcttgtgcttcaagaatcttgttatataaatacttctttttccgttgaat |
187 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4455948 |
tgtagaaggtaattcttgtgcttcaagaatcttgttatataaatacttctttttccgttgaat |
4456010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 544 - 757
Target Start/End: Original strand, 55150416 - 55150637
Alignment:
| Q |
544 |
ggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagcgacaaaacttag-----------aaaatgcaagttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| ||||||||||||| |
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| T |
55150416 |
ggattgctacttgttatgatcttggatatacaagcatcatttgtgagagtgattgtttagaagcggtgaatcttattcacaatatgaaaaatgcaagttt |
55150515 |
T |
|
| Q |
631 |
gcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgac |
730 |
Q |
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|||||||||||||| ||||||||||||||||| |||| |||||| ||| | ||||||||||||||||||||| | |||| || |||||||||||| |
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| T |
55150516 |
gcatgtgtatgcatttgtgttactagaaatctcagatgccttacatcatta-----taaatttagttcatattttgagggagcagaacatttgtgctgac |
55150610 |
T |
|
| Q |
731 |
tttatagctaaggaggctttttattcc |
757 |
Q |
| |
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||||| ||||||||||||| ||||||| |
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| T |
55150611 |
tttatggctaaggaggcttcttattcc |
55150637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 544 - 735
Target Start/End: Original strand, 13773750 - 13773954
Alignment:
| Q |
544 |
ggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagcgacaaaactta-----------gaaaatgcaagttt |
630 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||||||||| ||||||| |||||||||| || |||| |||||||||||||| |
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| T |
13773750 |
ggattgctactttttatgatcttggatatacaagcatcatttgtgaaagtgattatttagaagcggtgaatcttattcagaatttggaaaatgcaagttt |
13773849 |
T |
|
| Q |
631 |
gcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgac |
730 |
Q |
| |
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||||||||||| ||||||||||||| |||||| |||||||| || ||| || ||||||||||||||||||||||| | ||| ||| ||||||||||| |
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| T |
13773850 |
gcatgtgtatgtatctgtgttactaaaaatctaagatgtcttgcatcattggactgtaaatttagttcatattttgagggagcgaaacatttgtgctgat |
13773949 |
T |
|
| Q |
731 |
tttat |
735 |
Q |
| |
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||||| |
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| T |
13773950 |
tttat |
13773954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 640 - 749
Target Start/End: Original strand, 29827601 - 29827711
Alignment:
| Q |
640 |
tgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgac-tttatagc |
738 |
Q |
| |
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||||||||||||| ||||||||| | ||| ||||| | ||||| ||||||||||||||||||||| | | | ||||| |||||||||||| ||||| | |
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| T |
29827601 |
tgcatctgtgttattagaaatctcgaatgcattacatcgtgagactgtaaatttagttcatattttaagggaacaaaacatttgtgctgacttttatgac |
29827700 |
T |
|
| Q |
739 |
taaggaggctt |
749 |
Q |
| |
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||||||||||| |
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|
| T |
29827701 |
taaggaggctt |
29827711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 606
Target Start/End: Original strand, 29827502 - 29827566
Alignment:
| Q |
544 |
ggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagcg |
606 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
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|
| T |
29827502 |
ggattgctacttgttatgatcttggatatgcaagcatcatttgtgagagtgattgtttagaagcg |
29827566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 667
Target Start/End: Complemental strand, 19192642 - 19192592
Alignment:
| Q |
617 |
gaaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggat |
667 |
Q |
| |
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|||||||||||||||||||||||||| ||| | ||||||||||||| |||| |
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| T |
19192642 |
gaaaatgcaagtttgcatgtgtatgcctctatcttactagaaatctcggat |
19192592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 551 - 749
Target Start/End: Complemental strand, 2941588 - 2941377
Alignment:
| Q |
551 |
tacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaagc---ga--------caaaacttagaaaatgcaagtttgcatgtg |
637 |
Q |
| |
|
||||||||| |||||| |||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||| |||||| |
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| T |
2941588 |
tacttgttacgatcttggatatacaagcatcatttgtgagagtgattgcttagaagctgtgaatcttattcaaaacttggaaaatgcaagttttcatgtg |
2941489 |
T |
|
| Q |
638 |
tatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgactttatag |
737 |
Q |
| |
|
||||||| || |||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||| | |||| || ||||||||||| ||||| | |
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| T |
2941488 |
tatgcatttgcgttactagaaatctcggatgccttacatcatgagactgtaaatttagttcatattttgagggagcagaacatttgtgctgattttatgg |
2941389 |
T |
|
| Q |
738 |
ctaaggaggctt |
749 |
Q |
| |
|
|||| ||||||| |
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|
| T |
2941388 |
ctaaagaggctt |
2941377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0445 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0445
Description:
Target: scaffold0445; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 611 - 707
Target Start/End: Complemental strand, 10884 - 10788
Alignment:
| Q |
611 |
aacttagaaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttga |
707 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||| ||| || | ||||||||||| ||||||||| |
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| T |
10884 |
aacttggaaaatgcaagtttgcatgtgtatgcatatgtgttactagaaatatcggatgccttacataatgggactataaatttagttaatattttga |
10788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 611 - 745
Target Start/End: Original strand, 29209880 - 29210013
Alignment:
| Q |
611 |
aacttagaaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaaga |
710 |
Q |
| |
|
||||| |||||||||||||||||| | |||| | |||| |||||||||||| ||||| ||| || |||| || |||||||| |||||||||| ||| | |
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| T |
29209880 |
aacttggaaaatgcaagtttgcattttcatgcttatgtgctactagaaatctcggatgccttgcatcatg-gactgtaaattcagttcatattatgaggg |
29209978 |
T |
|
| Q |
711 |
agcaaaatatttgtgctgactttatagctaaggag |
745 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||| |
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| T |
29209979 |
agcagaacatttgtgctgactttatggctaaggag |
29210013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 672
Target Start/End: Original strand, 21237326 - 21237379
Alignment:
| Q |
619 |
aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtctt |
672 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||| |
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|
| T |
21237326 |
aaatgtaagtttgcatgtgtatgtctctgtgttgctagaaatctcagatgtctt |
21237379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 7881970 - 7881887
Alignment:
| Q |
618 |
aaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcata |
701 |
Q |
| |
|
||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || ||||||| ||||||||||||||||| |
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|
| T |
7881970 |
aaaatacaagtttacatgtatatgcctctgtgttactagaaatctcggatgccttgcatcatgagactgtaaatttagttcata |
7881887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 603
Target Start/End: Complemental strand, 7882057 - 7881996
Alignment:
| Q |
544 |
ggattgctacttgttatgatcttagatatacat--atcatttgtgagagtgattgtttagaa |
603 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| || |||||||||||||||||||||||| |
|
|
| T |
7882057 |
ggattgctacttgatatgatcttggttatacaagcattatttgtgagagtgattgtttagaa |
7881996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 681
Target Start/End: Original strand, 17344768 - 17344830
Alignment:
| Q |
619 |
aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatga |
681 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||||||||| |||| ||| |||||||| |
|
|
| T |
17344768 |
aaatgtaagtttgcaaatgtatgcatctatgttactagaaatctcagatgccttgcaacatga |
17344830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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