View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19347_low_2 (Length: 443)
Name: NF19347_low_2
Description: NF19347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19347_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 37269035 - 37268606
Alignment:
| Q |
12 |
tcatcaagcatctattggggttaaacattactcaaaggcaacccaattttatcaacacattttttgtcaccgtgatattagtacgaagtttccactatcg |
111 |
Q |
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| T |
37269035 |
tcatcaagcatctattggggttaaacattactcaaaggcaacccaattttatcaacacatttt--gtcaccatgatattagtacgaagtttccactatcg |
37268938 |
T |
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| Q |
112 |
tttaaacatgactaatctttgtcagaaaatctatagaacacataaggtggattctccccttccaaccagattttttccatttgtatgagtcggaagtcaa |
211 |
Q |
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| T |
37268937 |
tttaaccatgactaatctttgtcagaaaatctatagaacacataaggtggattctccccttccaaccagattttttccatttgtatgagtcggaagtcaa |
37268838 |
T |
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| Q |
212 |
acctcaaacaaatacataaaaggctaaagtttctcgtcacttgaacaaatctattgttagtattttattgacactttaacaaaattctctcgataaattt |
311 |
Q |
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|||||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37268837 |
acctcagacaaatacataaaaggctaaagtttatggtcacttgaacaaatctactgttagtattttattgacactttaacaaaattctctcgataagttt |
37268738 |
T |
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| Q |
312 |
gtggnnnnnnnnntcgttatacatagtattttccaatttgtattgtgcatggtataatatctaatcggcctgtgtctaatctagggctcagcttctgtta |
411 |
Q |
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| T |
37268737 |
gtggaaaaaaaaatggttatacatagtattttccaatttgtattgtgcatggtataatatctaatcggcctgtgtctaatctagggctcagcttctgtta |
37268638 |
T |
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| Q |
412 |
tttgtggttgcaccagctattctttgggttct |
443 |
Q |
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| T |
37268637 |
tttgtggttgcaccagctattctttgggttct |
37268606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 37272693 - 37272644
Alignment:
| Q |
394 |
agggctcagcttctgttatttgtggttgcaccagctattctttgggttct |
443 |
Q |
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| T |
37272693 |
aggggtcagcttctgttgtttgtggtaacaccagctattctttgggttct |
37272644 |
T |
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