View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19347_low_4 (Length: 373)
Name: NF19347_low_4
Description: NF19347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19347_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 155 - 362
Target Start/End: Original strand, 55202832 - 55203053
Alignment:
| Q |
155 |
taaacaacagaagtagaatttgcactcaacaacgatataataatcttcatatatttccacttattttcacacttctcattccatttataaactttcttaa |
254 |
Q |
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| T |
55202832 |
taaacaacagaagtagaatttgcactcaacaacgatataataatcttcatatatttccacttattttcacacttctcattccatttataaactttcttaa |
55202931 |
T |
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| Q |
255 |
tcacttccaaaacaa--------------tcatcttcatcccaagcaataatgttatctatatattagaaaaaagatatttgatagcacgatcctgagca |
340 |
Q |
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| T |
55202932 |
tcacttccaaaacaatcatttgaagttgttcatcttcatcccaagcaataatgttatctatatattagaaaaaagatatttgatagcacgatcctgagca |
55203031 |
T |
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| Q |
341 |
caagaaaacggcataagaaaag |
362 |
Q |
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|||||||||||||||||||||| |
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| T |
55203032 |
caagaaaacggcataagaaaag |
55203053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 55202707 - 55202834
Alignment:
| Q |
3 |
tttccctattaagctcattcaaacgatcaagcacaatgagttt--cacattgttatcactcttggaagaaagtaataactgacaataagtagtagcagca |
100 |
Q |
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| T |
55202707 |
tttccctattaagctcattcaaacgatcaagcacaatgagtttttcacattgttatcactcttggaagaaagtaataactgacaataagtagtggcagta |
55202806 |
T |
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| Q |
101 |
actttaattgcattaggtgtagaactaa |
128 |
Q |
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| T |
55202807 |
actttaattgcattaggtgtagaactaa |
55202834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 1472024 - 1471820
Alignment:
| Q |
5 |
tccctattaagctcattcaaacgatcaagcacaatgagtttcacattgttatcactcttggaagaaagtaataactgacaataagtagtagcagcaactt |
104 |
Q |
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| T |
1472024 |
tccctcttaagctcgttaagccgatcaagcacaataagcttcacattgttatcactctg---agaaagcaataactgacaataagtattcgcagccgctt |
1471928 |
T |
|
| Q |
105 |
taattgcattaggtgtagaactaaccaaaacaagtgtaccagcacattcataaacaacagaagtagaatttgcactcaacaacgatataataatcttcat |
204 |
Q |
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| T |
1471927 |
taatcgcggttggtgcagaactaagcgaaacaagcgtaccagcacattcataaacaacagcagtagaattagcactcaacaaagaaataataatcttaat |
1471828 |
T |
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| Q |
205 |
atatttcc |
212 |
Q |
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|||||||| |
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| T |
1471827 |
atatttcc |
1471820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 46467104 - 46466935
Alignment:
| Q |
11 |
ttaagctcattcaaacgatcaagcacaatgagtttcacattgttatcactcttggaagaaagtaataactgacaataagtagtagcagcaactttaattg |
110 |
Q |
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|||||||| || | ||||||||||||||| |||||||||||||||||||| | ||||| || |||| |||||||| | |||||||| ||| ||||| |
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| T |
46467104 |
ttaagctcgttaagacgatcaagcacaataagtttcacattgttatcactatg---agaaatcaacaacttacaataagcactagcagcagcttcaattg |
46467008 |
T |
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| Q |
111 |
cattaggtgtagaactaaccaaaacaagtgtaccagcacattcataaacaacagaagtagaatttgcactcaacaa |
186 |
Q |
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| T |
46467007 |
cagtaggtgcag---taagtgaaacaagtgcaccagcacattcataaacaacagcattagaacttgcactcaacaa |
46466935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 46466808 - 46466756
Alignment:
| Q |
310 |
aaaaagatatttgatagcacgatcctgagcacaagaaaacggcataagaaaag |
362 |
Q |
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| T |
46466808 |
aaaaagatatttgattgcacgatcctgagcacaagaaatcagcataagaaaag |
46466756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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