View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19347_low_6 (Length: 311)
Name: NF19347_low_6
Description: NF19347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19347_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 295
Target Start/End: Complemental strand, 42767982 - 42767690
Alignment:
| Q |
3 |
aatcatgccgtggaccctggacttgtttatgacctaaatatcaccgactatacgaactatttgtgcaaccgtggctacaaaggttctcgccttactatat |
102 |
Q |
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| T |
42767982 |
aatcatgccgtggaccctggacttgtttatgacctaaatatcaccgactatacgaactatttgtgcaaccgtggctacaaaggttctcgccttactatat |
42767883 |
T |
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| Q |
103 |
tctacggcaagcgatatatttgtccaaaatctttcaatttattagatttcaattatccttcaatctcaattcccaacttgaagatcggagattctctaaa |
202 |
Q |
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| T |
42767882 |
tctacggcaagcgatatatttgtccaaaatctttcaatttattagatttcaattatccttcaatctcaattcccaacttgaagattagagattttctaaa |
42767783 |
T |
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| Q |
203 |
tgttactcgtactcttaccaacgttgggtctccaagcacatataaagttcacattcaagcacctcatgaagttttagtctccgtagagcctaa |
295 |
Q |
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| T |
42767782 |
tgttactcgtactctcaccaacgttgggtctccaagcacatataaagttcacattcaagcacctcatgaagttttagtctccgtagagcctaa |
42767690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 42715296 - 42715065
Alignment:
| Q |
15 |
gaccctggacttgtttatgacctaaatatcaccgactatacgaactatttgtgcaaccgtggctacaaaggttctcgccttactatattctacggcaagc |
114 |
Q |
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| T |
42715296 |
gaccctggacttgtatatgacctaaatattactgactatatgaactttttgtgcgctcgtggctacaatagttccatgcttaggtttttctatggcaagc |
42715197 |
T |
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| Q |
115 |
gatatatttgtccaaaatctttcaatttattagatttcaattatccttcaatctcaattcccaacttgaagatcggagattctctaaatgttactcgtac |
214 |
Q |
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| T |
42715196 |
cctacacttgtccaaaatccttcaatttgaaagatttcaactatccagcaatcacaattctggactttaaagtcggacaatctataaatgttactcgtac |
42715097 |
T |
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| Q |
215 |
tcttaccaacgttgggtctccaagcacatata |
246 |
Q |
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| T |
42715096 |
tcttacaaacgtggggtctccaagcacatata |
42715065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 42736580 - 42736728
Alignment:
| Q |
117 |
tatatttgtccaaaatctttcaatttattagatttcaattatccttcaatctcaattcccaacttgaagatcggagattctctaaatgttactcgtactc |
216 |
Q |
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|||| ||||||||||||||||||| || |||||||||||||||| | ||| ||||||| |||| || || ||| | ||| | ||||||||||||||| |
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| T |
42736580 |
tatacttgtccaaaatctttcaatataatagatttcaattatccagccatcacaattcctgactttaaaattggacactctttgaatgttactcgtactg |
42736679 |
T |
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| Q |
217 |
ttaccaacgttgggtctccaagcacatataaagttcacattcaagcacc |
265 |
Q |
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| T |
42736680 |
taaccaatgttggctccccaagtacttatagagttcgcgtccaagcacc |
42736728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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