View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19347_low_7 (Length: 309)

Name: NF19347_low_7
Description: NF19347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19347_low_7
NF19347_low_7
[»] chr2 (4 HSPs)
chr2 (16-291)||(33026372-33026647)
chr2 (2-280)||(33037856-33038139)
chr2 (23-280)||(33020038-33020292)
chr2 (31-132)||(33023912-33024013)
[»] chr6 (1 HSPs)
chr6 (28-276)||(24417562-24417804)
[»] scaffold1004 (1 HSPs)
scaffold1004 (22-291)||(1867-2133)
[»] scaffold0760 (1 HSPs)
scaffold0760 (22-291)||(4362-4628)
[»] chr7 (1 HSPs)
chr7 (166-215)||(27755555-27755604)
[»] chr3 (12 HSPs)
chr3 (165-208)||(763705-763748)
chr3 (165-208)||(9585279-9585322)
chr3 (22-79)||(9608626-9608683)
chr3 (159-228)||(44001473-44001542)
chr3 (41-81)||(771770-771810)
chr3 (162-202)||(783949-783989)
chr3 (165-215)||(9587322-9587372)
chr3 (28-81)||(784070-784123)
chr3 (162-191)||(7430652-7430681)
chr3 (102-135)||(7443203-7443236)
chr3 (28-81)||(9587459-9587512)
chr3 (151-208)||(43991813-43991870)
[»] scaffold0044 (1 HSPs)
scaffold0044 (37-132)||(88876-88971)
[»] chr1 (3 HSPs)
chr1 (163-201)||(51854806-51854844)
chr1 (163-201)||(51858465-51858503)
chr1 (163-208)||(51829632-51829677)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 33026372 - 33026647
Alignment:
Q  16 agagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33026372 agagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttttga 33026471  T
Q  116 gtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026472 gtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 33026571  T
Q  216 ggattttgagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgat 291  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026572 agattttgagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgat 33026647  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 33037856 - 33038139
Alignment:
Q  2 tcttgaggaggagcagagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatt 101  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  | | |     
T  33037856 tcttgtggagga-cagagaggaagtaagtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggta 33037954  T
Q  102 tggaatatttgtgagtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaa 201  Q
    ||||||||||||  ||||||||||||||||| ||||||| ||| | ||||||||||  || ||||||||||||||||||||||||||||| | |||||||    
T  33037955 tggaatatttgtcggtggcactgttaattggttgtcgttagacgaagtgagttctttgtgcgtcattgtttctcttgatttggagaaggaatcgtatcaa 33038054  T
Q  202 acgctttcgctgccggattttgagaaggatcgtttgataa------gaactttgtgggttttgagggattgcttgtgcatctttg 280  Q
    |||||||||||||| ||| ||||||| |||| ||||| ||      |   |||| ||||||||||||||||||||||||||||||    
T  33038055 acgctttcgctgcctgatattgagaatgatcctttgacaaatttgggggatttgggggttttgagggattgcttgtgcatctttg 33038139  T

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Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 33020038 - 33020292
Alignment:
Q  23 aagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcac 122  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||| |  | | | |||||||||||||||||||||    
T  33020038 aagtaagtgttcatactttgggtacggatacttggagaaggataccagacttcccatgttttggcccgtgtcgtgggtatggaatatttgtgagtggcac 33020137  T
Q  123 tgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggatttt 222  Q
     ||||||||| || | |||||  ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||     
T  33020138 agttaattggttggcattcgaagatgtgagttctccgtgtgtcattgtttctcttgatttggagaaggagtcgtatcaaacgtttttgctgcctgatttc 33020237  T
Q  223 gagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttg 280  Q
    |||||||||| ||||   | || |||| ||||||||||||||||||||||| ||||||    
T  33020238 gagaaggatcctttg---acaaatttgggggttttgagggattgcttgtgcttctttg 33020292  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 33023912 - 33024013
Alignment:
Q  31 gttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgttaatt 130  Q
    ||||||||||||| |||  |||| ||| ||||||| ||| |||||||||||  |||| |||||  | | || ||||||||||||||| ||| ||||||||    
T  33023912 gttcatactttggatacgaatacatggtgaaggatgccaaacttcccatattttggctcgttttgtgggttgggaatatttgtgagtcgcaatgttaatt 33024011  T
Q  131 gg 132  Q
    ||    
T  33024012 gg 33024013  T

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Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 28 - 276
Target Start/End: Complemental strand, 24417804 - 24417562
Alignment:
Q  28 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 127  Q
    |||||||||||  ||||||||||| ||||||||| ||||| |||||||||||||  | ||| |||  |||| || ||||||||||||||||||||| |||    
T  24417804 agtgttcataccctgggtacagattcttggagaacgatacaagacttcccatattctcgccagttacatcggttgggaatatttgtgagtggcactatta 24417705  T
Q  128 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaa 227  Q
    ||||| ||  | | ||| |||   ||||||| | | |||||||||||||||||||||| || ||||  ||| ||  |||| |||||||  |||| ||| |    
T  24417704 attggttggtggtagacgatg---gttcttcgtttttcattgtttctcttgatttggaaaatgagtcatataaacggcttgcgctgcctaatttggagga 24417608  T
Q  228 ggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatc 276  Q
     ||| |||| | |||   |||| |||||||||||||||| |||||||||    
T  24417607 tgattgtttcacaag---tttgggggttttgagggattgtttgtgcatc 24417562  T

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Target: scaffold1004 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 1867 - 2133
Alignment:
Q  22 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggca 121  Q
    ||||| ||||||||||||||||||||  || |||||| || |||||  ||||||||||||| | | |||||   | | |  ||||||||||||| |||||    
T  1867 gaagttagtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggca 1966  T
Q  122 ctgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattt 221  Q
     |||||||||| || | || ||   ||||| |||||| ||||||||||||||||||||||||  ||| ||||  ||||||| ||||| ||  ||  || |    
T  1967 atgttaattggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttgacgaaagagtcatatcaaaagcttttgccacctaatat 2066  T
Q  222 tgagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgat 291  Q
     |||| ||||| || |   |  |||||| ||||||| | |||||||||||||||||||| ||| ||||||    
T  2067 ggagatggatcattgg---acgactttgggggttttaaaggattgcttgtgcatctttgcaagtaatgat 2133  T

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Target: scaffold0760 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 4362 - 4628
Alignment:
Q  22 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggca 121  Q
    ||||| ||||||||||||||||||||  || |||||| || |||||  ||||||||||||| | | |||||   | | |  ||||||||||||| |||||    
T  4362 gaagttagtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggca 4461  T
Q  122 ctgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattt 221  Q
     |||||||||| || | || ||   ||||| |||||| ||||||||||||||||||||||||  ||| ||||  ||||||| ||||| ||  ||  || |    
T  4462 atgttaattggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttgacgaaagagtcatatcaaaagcttttgccacctaatat 4561  T
Q  222 tgagaaggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgat 291  Q
     |||| ||||| || |   |  |||||| ||||||| | |||||||||||||||||||| ||| ||||||    
T  4562 ggagatggatcattgg---acgactttgggggttttaaaggattgcttgtgcatctttgcaagtaatgat 4628  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 27755555 - 27755604
Alignment:
Q  166 attgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 215  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  27755555 attgtttctcttgatttggagaaggagttgtatgaaaagcttgcgctgcc 27755604  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 763748 - 763705
Alignment:
Q  165 cattgtttctcttgatttggagaaggagttgtatcaaacgcttt 208  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  763748 cattgtttctcttgatttggagaaggagtcgtatcaaaagcttt 763705  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 9585322 - 9585279
Alignment:
Q  165 cattgtttctcttgatttggagaaggagttgtatcaaacgcttt 208  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  9585322 cattgtttctcttgatttggagaaggagtcgtatcaaaagcttt 9585279  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 9608683 - 9608626
Alignment:
Q  22 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccat 79  Q
    ||||| ||||||||||||||||| || |||  |||||||||||||| |||||||||||    
T  9608683 gaagttagtgttcatactttgggcactgattattggagaaggatacaagacttcccat 9608626  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 44001473 - 44001542
Alignment:
Q  159 ctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaag 228  Q
    ||||| |||||||||||||||| | || |||||||  ||||||  |||||||||||| ||||||||||||    
T  44001473 ctgtgacattgtttctcttgatcttgaaaaggagtcatatcaacagctttcgctgcctgattttgagaag 44001542  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 771810 - 771770
Alignment:
Q  41 tgggtacagatacttggagaaggataccagacttcccatat 81  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  771810 tgggtacagattcttggagaaggatacaagacttcccatat 771770  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 783989 - 783949
Alignment:
Q  162 tgtcattgtttctcttgatttggagaaggagttgtatcaaa 202  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  783989 tgtcattgtttctcttgatttggagaatgagtcgtatcaaa 783949  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 9587372 - 9587322
Alignment:
Q  165 cattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 215  Q
    |||||||||||||||||||||||| |||| ||||||||  |||| ||||||    
T  9587372 cattgtttctcttgatttggagaacgagtcgtatcaaaatcttttgctgcc 9587322  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 784123 - 784070
Alignment:
Q  28 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 81  Q
    |||||| ||||||||||||| ||| ||||||| ||||| | |||||||||||||    
T  784123 agtgtttatactttgggtaccgattcttggaggaggatccaagacttcccatat 784070  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 7430681 - 7430652
Alignment:
Q  162 tgtcattgtttctcttgatttggagaagga 191  Q
    ||||||||||||||||||||||||||||||    
T  7430681 tgtcattgtttctcttgatttggagaagga 7430652  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 7443236 - 7443203
Alignment:
Q  102 tggaatatttgtgagtggcactgttaattggatg 135  Q
    ||||||||||||| ||||||||||||||||||||    
T  7443236 tggaatatttgtgggtggcactgttaattggatg 7443203  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 9587512 - 9587459
Alignment:
Q  28 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 81  Q
    |||||| |||||||||||||  |||||||||| ||||| | |||||||||||||    
T  9587512 agtgtttatactttgggtaccaatacttggaggaggatccaagacttcccatat 9587459  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 43991813 - 43991870
Alignment:
Q  151 agttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgcttt 208  Q
    ||||| || |||| ||||||||||||||||||||||| |||||  ||||||| |||||    
T  43991813 agttcctcttgtgccattgtttctcttgatttggagacggagtcttatcaaaagcttt 43991870  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 88876 - 88971
Alignment:
Q  37 actttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgttaattgg 132  Q
    ||||| ||||| |||  ||||||||| |||  ||||||||||||| |||| || ||  ||  ||  ||||||||||||||||||||||||||||||    
T  88876 actttaggtactgattattggagaagaataaaagacttcccatatgatggtcccttacatgaatcgggaatatttgtgagtggcactgttaattgg 88971  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 51854806 - 51854844
Alignment:
Q  163 gtcattgtttctcttgatttggagaaggagttgtatcaa 201  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  51854806 gtcattgtttctcttgatttggagaatgggttgtatcaa 51854844  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 51858465 - 51858503
Alignment:
Q  163 gtcattgtttctcttgatttggagaaggagttgtatcaa 201  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  51858465 gtcattgtttctcttgatttggagaatgagttgtgtcaa 51858503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 51829632 - 51829677
Alignment:
Q  163 gtcattgtttctcttgatttggagaaggagttgtatcaaacgcttt 208  Q
    |||||||||||| |||||||  ||||||||| ||||||||||||||    
T  51829632 gtcattgtttcttttgatttacagaaggagtcgtatcaaacgcttt 51829677  T

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