View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19348_high_1 (Length: 280)
Name: NF19348_high_1
Description: NF19348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19348_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 9231185 - 9230928
Alignment:
| Q |
8 |
agattattctctcgagttcaatatttgatgagttgttttattagataaaattcatatttgagactacatgtaaattaagttagaagagacctaatattat |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
9231185 |
agattaatctctcgagttcaatatttgatgagctgttttattagataaaattcatatttgagactacatgtaaattaagttaggagagatccgatattat |
9231086 |
T |
|
| Q |
108 |
tgagatagtttgggtctcttcttacttaacaagagattatgaatttgagtaaaactttagttaggaatgcagcaacgtcaaaattcttgagaaaaaattg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||| |||||||| |||||| |
|
|
| T |
9231085 |
tgagatagtttgggtctcttcttacttaacaagaggttatgaatttgagtaaaactctagttaggaatgcggcagcgtcaaaaatcttgagagaaaattt |
9230986 |
T |
|
| Q |
208 |
tctttgtagtatcaaacttgaagaattagtgtttgcaattacgaatagatgatattca |
265 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230985 |
tctttgtagtaccaaacttgaagaattagtgtttgcaattacgaatagatgatattca |
9230928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University