View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19348_high_3 (Length: 234)
Name: NF19348_high_3
Description: NF19348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19348_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 38213635 - 38213837
Alignment:
| Q |
20 |
gaacagggtatatatagtgttctcaatataccgaaaactgataaggaagtgatacaaactacaaagaatttgatttatttgatcacgtgttatctaagat |
119 |
Q |
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| T |
38213635 |
gaacagggtatatatagtgttctcaatataccgaaaactgataaggaagtggtacaaactacaaagaatgtgatttatttgatcacatgttatctaagat |
38213734 |
T |
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| Q |
120 |
agacacc-aaaatatatagaggaatatataaaataaaagaatcataacaaat-----taagatggctattatatgttcttcatcattgatctctcatcag |
213 |
Q |
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| T |
38213735 |
agacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaataagatggctattatatgttcttcatcattgatctctcatcag |
38213834 |
T |
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| Q |
214 |
aac |
216 |
Q |
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||| |
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| T |
38213835 |
aac |
38213837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 38217913 - 38218056
Alignment:
| Q |
79 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa---- |
173 |
Q |
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| T |
38217913 |
tacaaagaatttgatttatttgatcatgtgctatctaaaatagacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaata |
38218012 |
T |
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| Q |
174 |
-gatggctattatatgttcttcatcattgatctctcatcagaac |
216 |
Q |
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| T |
38218013 |
agatggctattatatgttcttcatcattgatctctcatcagaac |
38218056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 42993697 - 42993602
Alignment:
| Q |
79 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacacc-aaaatatatagaggaatatataaaataaaagaatcataacaaattaa |
173 |
Q |
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| T |
42993697 |
tacaaagaatttgatttatttcatcatctgttatataaaacagacaccaaaaaaatacagaggaagatagtaaatcaaagaatcataataaattaa |
42993602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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