View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19348_low_2 (Length: 281)
Name: NF19348_low_2
Description: NF19348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19348_low_2 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 39935145 - 39934877
Alignment:
| Q |
13 |
caataatcaattctttaaagcctcatccatgtatcaatgattcatccatcacatgcaaaccaccaacaggaatccaatacacagttttatacataagcat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39935145 |
caataatcaattctttaaagcctcatccatgtatcaatgattcatccatcacatgcaaaccaccaacaggaatccaatacacagttttatacataagcat |
39935046 |
T |
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| Q |
113 |
attattaatatcaattggttttggtcttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatc |
212 |
Q |
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| T |
39935045 |
attattaatatcaattggttttggtcttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatc |
39934946 |
T |
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| Q |
213 |
ggtctttaggaccccattttaaaatcccagctagttctgttgctgttattgtcttaatatcagcaccca |
281 |
Q |
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| T |
39934945 |
ggtctttaggaccccattttaaaatcccagctagttttgtttctgttattgtcttaatatcagcaccca |
39934877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 134 - 281
Target Start/End: Original strand, 39695091 - 39695238
Alignment:
| Q |
134 |
tggtcttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccatttta |
233 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
39695091 |
tggtcttcaagtatattcttagcaactccaatagcaatccaaagttgcttggttgtacttcaagctttagtcatggatcgttcattaggaccccatttta |
39695190 |
T |
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| Q |
234 |
aaatcccagctagttctgttgctgttattgtcttaatatcagcaccca |
281 |
Q |
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| T |
39695191 |
aaatcccagctagttctgtttctgttatagtcttgatatcagcaccca |
39695238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 39930599 - 39930479
Alignment:
| Q |
17 |
aatcaattctttaaagcctcatccatgtatcaatgattcatccatcacatgcaaaccaccaacaggaatccaatacacagttttatacataagcatatta |
116 |
Q |
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||||||||| ||||||||||||||||| | ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39930599 |
aatcaattcattaaagcctcatccatgcagcaaagattcatctactacatgcaaaccaccaacaggaatccaatacacagttttatacataagcatatta |
39930500 |
T |
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| Q |
117 |
ttaatatcaattggttttggt |
137 |
Q |
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| T |
39930499 |
ttaatatcaattggttttggt |
39930479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 39692738 - 39692847
Alignment:
| Q |
28 |
taaagcctcatccatgtatcaatgattcatccatcacatgcaaaccaccaacaggaatccaatacacagttttatacataagcatattattaatatcaat |
127 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |
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| T |
39692738 |
taaagcctcatccatgtagcaatgattcatcaatcacatgcaaaccaccaacaggaatccaatatacagttttatacataagcatagtgttaatatcaat |
39692837 |
T |
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| Q |
128 |
tggttttggt |
137 |
Q |
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|||||||||| |
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| T |
39692838 |
tggttttggt |
39692847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 39702700 - 39702820
Alignment:
| Q |
17 |
aatcaattctttaaagcctcatccatgtatcaatgattcatccatcacatgcaaaccaccaacaggaatccaatacacagttttatacataagcatatta |
116 |
Q |
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||||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
39702700 |
aatcaattcattaaagcctcatccatgcagcaatgattcatccatcacatgcataccaccaacaggaatccaatatacagttttatacataagcatagtc |
39702799 |
T |
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| Q |
117 |
ttaatatcaattggttttggt |
137 |
Q |
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| T |
39702800 |
ctaatatcaattggttttggt |
39702820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 139 - 274
Target Start/End: Original strand, 39704008 - 39704143
Alignment:
| Q |
139 |
ttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatc |
238 |
Q |
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||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||||| ||||||||| || |||||||||||||| ||||| |
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| T |
39704008 |
ttcaagtatattcttagcaactccaatagcaatccaaagtagtgtgacggtacttcaagctttagccatggatcgctcattaggaccccatttcaaaatt |
39704107 |
T |
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| Q |
239 |
ccagctagttctgttgctgttattgtcttaatatca |
274 |
Q |
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|||||| |||||||| ||||||| ||| |||||||| |
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| T |
39704108 |
ccagctggttctgtttctgttatagtcataatatca |
39704143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 281
Target Start/End: Complemental strand, 39929368 - 39929225
Alignment:
| Q |
138 |
cttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccattttaaaat |
237 |
Q |
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|||||||| |||||||||||| |||||||| ||| |||| ||| || ||||||||||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
39929368 |
cttcaagtctattcctatcaattccaatagtaatgcaaatggacttcattatacttcaagctttagtcatggatcgttctttaggataccattttgaaat |
39929269 |
T |
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| Q |
238 |
cccagctagttctgttgctgttattgtcttaatatcagcaccca |
281 |
Q |
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| T |
39929268 |
cccagctggttctatttctgttatagtcttaatatcagcaccca |
39929225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 38062001 - 38061925
Alignment:
| Q |
186 |
ttgtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcccagctagttctgttgctgttatt |
262 |
Q |
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|||||||||||| |||| |||||||||| ||| ||||| | |||||||||||||||||| |||||||| |||||||| |
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| T |
38062001 |
ttgtacttcaagatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttatt |
38061925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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