View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19349_high_24 (Length: 236)
Name: NF19349_high_24
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 34220004 - 34220212
Alignment:
| Q |
14 |
caaaggaacaactcttggtaaaagattttctttctgtct--gtatatatttattatagttgtcttcgtacctgtgttaagcttcaatcgattgagagtgt |
111 |
Q |
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| T |
34220004 |
caaaggaacaactcttggtaaaagattttctttccgtctttgtatatatttattatagttgtcttcgtacctgtgttaagcttcaatcgattgagagtgt |
34220103 |
T |
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| Q |
112 |
taacagaatgatcagaggcttagtatgcatgtttggtatcatggcatcgttgagtttgtcaaaatcatagcgagtaaaagctatgtaggtagctcaccca |
211 |
Q |
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| T |
34220104 |
taacagaatgatcagaggcttagtatgcatgtttggtatcatggcatcgttgagtttgtcaaaatcatagcgagtaaaagctatgtaggtggctcaccca |
34220203 |
T |
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| Q |
212 |
ccatgattc |
220 |
Q |
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| T |
34220204 |
ccatgattc |
34220212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 34208924 - 34208994
Alignment:
| Q |
63 |
attatagttgtcttcgtacctgtgttaagcttcaatcgattgagagtgttaacagaatgatcagaggctta |
133 |
Q |
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| T |
34208924 |
attattgttgtctttgtacctgtgtttaggtttaatccattgagagtgataatagaatgatcagaggctta |
34208994 |
T |
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