View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19349_high_26 (Length: 234)
Name: NF19349_high_26
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 15781572 - 15781347
Alignment:
| Q |
1 |
atctcaaaatacatcaattaaacaacaagattctcaacaaaattcaacaagtaaaataaataactactcccgaccaaggtcctaatgaaagcctacaacc |
100 |
Q |
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| T |
15781572 |
atctcaaaatacatcaattaaacaacaagattctcaacaaaattcaacaagtaaaataaataactactcccgaccaaggtcctaatcaaagcctacaacc |
15781473 |
T |
|
| Q |
101 |
agactccaaagcaagcaagaaaaacgaggaagtgtcaagctaagcctcaggtactcacgcgtctcacgcgt-ctcaa-------gtttacaccattttgc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||| ||||||||||||||| |
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| T |
15781472 |
agactccaaagcaagcaagaaaaacgaggaagtgtcaagctaagcctcgggtactcacacgtctcaagcgtactcaacctgcacatttacaccattttgc |
15781373 |
T |
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| Q |
193 |
aatggaaaggcggtcaaacaaccatt |
218 |
Q |
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|||||||||||||||||||||||||| |
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| T |
15781372 |
aatggaaaggcggtcaaacaaccatt |
15781347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 25010951 - 25011040
Alignment:
| Q |
72 |
gaccaaggtcctaatgaaagcctacaaccagactccaaa-gcaagcaagaaaaacgaggaagtgtcaagctaagcctcaggtactcacgc |
160 |
Q |
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||||||||||||||| | |||||||||| |||||||||| |||||||||||||| |||||||||||||||||| || ||||||||||||| |
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| T |
25010951 |
gaccaaggtcctaatcagagcctacaactagactccaaaagcaagcaagaaaaatgaggaagtgtcaagctaatccacaggtactcacgc |
25011040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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