View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19349_high_6 (Length: 420)

Name: NF19349_high_6
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19349_high_6
NF19349_high_6
[»] scaffold0432 (1 HSPs)
scaffold0432 (239-388)||(6404-6551)
[»] chr1 (21 HSPs)
chr1 (240-388)||(4213112-4213258)
chr1 (246-388)||(7918953-7919093)
chr1 (237-388)||(48983550-48983699)
chr1 (240-388)||(40439725-40439871)
chr1 (242-388)||(5771631-5771779)
chr1 (286-388)||(17082674-17082774)
chr1 (240-346)||(47642492-47642598)
chr1 (242-345)||(48858904-48859007)
chr1 (249-405)||(4857932-4858087)
chr1 (242-388)||(38878788-38878932)
chr1 (342-392)||(30439285-30439335)
chr1 (316-392)||(23645446-23645520)
chr1 (361-405)||(27687524-27687569)
chr1 (316-344)||(4776837-4776865)
chr1 (342-405)||(5477149-5477213)
chr1 (340-392)||(15470040-15470092)
chr1 (340-388)||(21433384-21433432)
chr1 (317-388)||(33076159-33076228)
chr1 (342-405)||(45272146-45272210)
chr1 (319-405)||(48220109-48220193)
chr1 (329-388)||(49660219-49660276)
[»] chr6 (12 HSPs)
chr6 (239-388)||(11635419-11635566)
chr6 (239-392)||(1286947-1287100)
chr6 (242-344)||(17182180-17182282)
chr6 (239-388)||(18064974-18065121)
chr6 (240-388)||(33712360-33712506)
chr6 (242-388)||(8645348-8645492)
chr6 (239-388)||(5739648-5739795)
chr6 (316-405)||(12588337-12588431)
chr6 (320-388)||(1376404-1376472)
chr6 (320-388)||(1384152-1384220)
chr6 (361-405)||(17442843-17442888)
chr6 (329-388)||(10335590-10335647)
[»] chr2 (25 HSPs)
chr2 (240-377)||(30831805-30831940)
chr2 (241-388)||(26480976-26481121)
chr2 (270-388)||(37003650-37003766)
chr2 (239-388)||(11965833-11965980)
chr2 (238-392)||(36587354-36587504)
chr2 (240-388)||(37316700-37316846)
chr2 (242-388)||(37731087-37731231)
chr2 (239-348)||(14871949-14872058)
chr2 (242-392)||(44239072-44239220)
chr2 (241-388)||(31578474-31578619)
chr2 (239-332)||(14877083-14877176)
chr2 (244-370)||(18510733-18510857)
chr2 (317-388)||(12784359-12784430)
chr2 (233-332)||(39234058-39234157)
chr2 (320-388)||(19916695-19916761)
chr2 (365-405)||(10060443-10060483)
chr2 (361-405)||(37737982-37738026)
chr2 (338-388)||(14876997-14877047)
chr2 (371-405)||(27695973-27696007)
chr2 (319-388)||(29449251-29449318)
chr2 (242-303)||(1079010-1079071)
chr2 (242-303)||(2427886-2427947)
chr2 (245-384)||(8847531-8847669)
chr2 (316-388)||(9207629-9207699)
chr2 (320-349)||(33414520-33414549)
[»] chr3 (25 HSPs)
chr3 (245-388)||(27168572-27168713)
chr3 (240-340)||(33472304-33472404)
chr3 (250-388)||(9862573-9862709)
chr3 (242-388)||(34307428-34307572)
chr3 (241-346)||(29525943-29526048)
chr3 (239-388)||(4494121-4494268)
chr3 (239-388)||(32362973-32363118)
chr3 (238-374)||(39713920-39714054)
chr3 (246-388)||(38671657-38671797)
chr3 (317-405)||(28700482-28700569)
chr3 (239-377)||(41443075-41443211)
chr3 (320-405)||(55361199-55361283)
chr3 (240-346)||(31104744-31104850)
chr3 (324-388)||(48152255-48152317)
chr3 (323-386)||(34064074-34064135)
chr3 (361-392)||(42424245-42424276)
chr3 (344-405)||(9753240-9753302)
chr3 (342-392)||(51464258-51464308)
chr3 (316-388)||(5244268-5244338)
chr3 (244-348)||(25188313-25188418)
chr3 (340-405)||(32205617-32205682)
chr3 (320-388)||(33939275-33939343)
chr3 (242-346)||(34456870-34456974)
chr3 (340-388)||(41670565-41670613)
chr3 (316-388)||(44813173-44813245)
[»] chr5 (19 HSPs)
chr5 (241-388)||(11954471-11954616)
chr5 (242-405)||(16971987-16972148)
chr5 (243-405)||(21210840-21211001)
chr5 (244-386)||(42446180-42446320)
chr5 (251-388)||(35075474-35075607)
chr5 (242-346)||(31748416-31748520)
chr5 (236-279)||(32872779-32872822)
chr5 (318-388)||(40364608-40364676)
chr5 (292-346)||(19981923-19981977)
chr5 (316-388)||(5168222-5168292)
chr5 (240-388)||(17097688-17097833)
chr5 (245-388)||(13089672-13089813)
chr5 (286-388)||(611904-612004)
chr5 (322-388)||(39195757-39195821)
chr5 (363-405)||(14923093-14923135)
chr5 (320-384)||(8097293-8097357)
chr5 (286-346)||(12739852-12739912)
chr5 (286-346)||(12802675-12802735)
chr5 (317-388)||(22098295-22098364)
[»] chr8 (29 HSPs)
chr8 (242-384)||(42652639-42652777)
chr8 (243-367)||(36874001-36874121)
chr8 (241-388)||(33451451-33451594)
chr8 (242-388)||(44090926-44091070)
chr8 (241-388)||(1068646-1068791)
chr8 (242-388)||(34435624-34435768)
chr8 (239-388)||(25987671-25987818)
chr8 (239-388)||(15716860-15717007)
chr8 (240-388)||(33107752-33107898)
chr8 (240-347)||(28772011-28772118)
chr8 (240-388)||(26026936-26027082)
chr8 (240-387)||(12241113-12241258)
chr8 (241-388)||(44061757-44061902)
chr8 (243-346)||(2730849-2730952)
chr8 (232-386)||(4672033-4672185)
chr8 (286-388)||(5600918-5601018)
chr8 (286-388)||(5639602-5639702)
chr8 (317-388)||(42786620-42786691)
chr8 (242-405)||(37172081-37172244)
chr8 (242-405)||(9630145-9630307)
chr8 (340-405)||(41541879-41541944)
chr8 (320-386)||(41639763-41639829)
chr8 (320-388)||(7777145-7777211)
chr8 (320-388)||(34186646-34186712)
chr8 (361-405)||(39211063-39211108)
chr8 (317-388)||(25830208-25830277)
chr8 (311-386)||(43397822-43397895)
chr8 (321-388)||(44825482-44825547)
chr8 (286-377)||(45405915-45406004)
[»] chr4 (31 HSPs)
chr4 (242-346)||(55266105-55266209)
chr4 (241-405)||(5386394-5386557)
chr4 (240-388)||(50050677-50050822)
chr4 (240-388)||(51255786-51255932)
chr4 (240-388)||(39158145-39158291)
chr4 (243-319)||(21014104-21014180)
chr4 (239-388)||(38519833-38519980)
chr4 (239-389)||(18315976-18316124)
chr4 (244-370)||(41262234-41262358)
chr4 (240-384)||(29227128-29227270)
chr4 (242-377)||(26600086-26600219)
chr4 (239-346)||(14443278-14443385)
chr4 (317-402)||(39605992-39606075)
chr4 (342-405)||(48494898-48494962)
chr4 (239-342)||(19651803-19651906)
chr4 (320-405)||(50608590-50608673)
chr4 (240-346)||(51577694-51577800)
chr4 (342-391)||(10994138-10994187)
chr4 (320-388)||(36130318-36130384)
chr4 (239-371)||(52204907-52205037)
chr4 (246-386)||(54000740-54000878)
chr4 (320-388)||(39478474-39478542)
chr4 (340-388)||(53796695-53796743)
chr4 (242-345)||(50506470-50506572)
chr4 (317-405)||(19232096-19232183)
chr4 (342-405)||(24310507-24310571)
chr4 (316-388)||(26732264-26732334)
chr4 (311-344)||(38376447-38376480)
chr4 (320-388)||(46634139-46634205)
chr4 (340-388)||(24509371-24509419)
chr4 (342-405)||(54036515-54036579)
[»] chr7 (28 HSPs)
chr7 (242-388)||(29723812-29723958)
chr7 (242-377)||(46880953-46881086)
chr7 (241-388)||(12007072-12007217)
chr7 (242-388)||(32777594-32777738)
chr7 (240-405)||(26749027-26749190)
chr7 (242-388)||(43807700-43807844)
chr7 (239-388)||(43081774-43081921)
chr7 (242-348)||(2008719-2008825)
chr7 (239-388)||(34978336-34978483)
chr7 (239-363)||(15325524-15325646)
chr7 (239-388)||(33845082-33845229)
chr7 (241-405)||(45419947-45420110)
chr7 (241-342)||(27570427-27570528)
chr7 (242-388)||(13152632-13152777)
chr7 (242-346)||(37352190-37352294)
chr7 (245-384)||(28249460-28249597)
chr7 (341-392)||(2414112-2414163)
chr7 (239-346)||(33057459-33057566)
chr7 (338-388)||(2008839-2008889)
chr7 (256-346)||(3148806-3148896)
chr7 (340-388)||(17945107-17945155)
chr7 (245-388)||(21103052-21103193)
chr7 (342-392)||(21752693-21752743)
chr7 (340-405)||(32748411-32748476)
chr7 (316-405)||(41989704-41989791)
chr7 (361-405)||(3062352-3062397)
chr7 (361-405)||(27866542-27866587)
chr7 (340-405)||(43942659-43942724)
[»] scaffold0201 (1 HSPs)
scaffold0201 (242-388)||(8512-8656)
[»] scaffold0034 (1 HSPs)
scaffold0034 (244-388)||(101790-101937)
[»] scaffold0618 (1 HSPs)
scaffold0618 (242-388)||(8840-8984)
[»] scaffold0128 (1 HSPs)
scaffold0128 (241-347)||(11013-11119)
[»] scaffold0257 (1 HSPs)
scaffold0257 (320-405)||(23991-24077)
[»] scaffold0110 (1 HSPs)
scaffold0110 (307-388)||(28279-28358)
[»] scaffold0276 (1 HSPs)
scaffold0276 (242-346)||(1724-1828)
[»] scaffold0184 (1 HSPs)
scaffold0184 (242-346)||(13444-13548)
[»] scaffold0078 (1 HSPs)
scaffold0078 (242-346)||(59296-59400)
[»] scaffold0085 (1 HSPs)
scaffold0085 (320-388)||(22819-22885)
[»] scaffold0504 (1 HSPs)
scaffold0504 (362-405)||(11168-11212)
[»] scaffold0053 (1 HSPs)
scaffold0053 (317-388)||(12537-12606)
[»] scaffold0018 (1 HSPs)
scaffold0018 (356-392)||(36037-36073)


Alignment Details
Target: scaffold0432 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 6404 - 6551
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||| ||||||||||||| |||||||| |||||| |||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||     
T  6404 aaagagcaatgctatttgaacaaccttttattgttacaacttcttatacaaccaaactatacaaagggatttagatagtgacacaaaaatcaaagtaat- 6502  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
     ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  6503 -agagagagaaagtagaagaacaatgtgagtatgagagataaagttgtca 6551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 240 - 388
Target Start/End: Complemental strand, 4213258 - 4213112
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| ||| ||||||||||||||||||||    
T  4213258 aagagcaatgttatttgaacaaccctttattgtgacaacttcttatacaaccaaattatataaaaagatttagatagtgacacaaaaatcaaagtaatag 4213159  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||  |||||  |||||||||||||||||||| ||||| ||||||||||    
T  4213158 aga--gagaaggtagaagaacaatgtgagtatgagagagaaagttgtca 4213112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 388
Target Start/End: Original strand, 7918953 - 7919093
Alignment:
Q  246 aatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagag 345  Q
    |||||||||||||||||||||| |||||||||||  ||| ||||||||||||||||||   |||||| | ||||||||||||||||||||||  ||||||    
T  7918953 aatgttatttgaacaaccctttcttgtgacaacttgttagacaaccaaattatacaaagaaatttaggtagtggcacaaaaatcaaagtaat--agagag 7919050  T
Q  346 agaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    | ||| |||||| ||||| ||||||| ||||| ||||||||||    
T  7919051 ataaagtagaaggacaatatgagtatgagagagaaagttgtca 7919093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 388
Target Start/End: Original strand, 48983550 - 48983699
Alignment:
Q  237 agaaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaa 336  Q
    |||||||||||||||||| | |||||| |||||||||||||||  ||  ||||||||||| ||||||   ||||||||  ||||||||||||||||| ||    
T  48983550 agaaagagcaatgttattggtacaaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagataatggcacaaaaatcaaagcaa 48983649  T
Q  337 tagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |  ||| ||||||| ||||| ||  |||||||||| ||||| ||||||||||    
T  48983650 t--agaaagagaaagtagaataatcatgtgagtatgagagagaaagttgtca 48983699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 388
Target Start/End: Original strand, 40439725 - 40439871
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||| |||  |||||||| |  ||  ||||||| ||||||||||   |||||| | ||| |||||| ||||||| |||||    
T  40439725 aagagcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagtgtcacaaatatcaaagcaatag 40439824  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||  ||||||| ||||||||||||||| |||| ||||| ||||||||||    
T  40439825 ag--agagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 40439871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 5771631 - 5771779
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag-- 339  Q
    |||||||||||||||||||| | ||| ||||||||||   ||| ||||| ||||||||||||   |||||| | |||||| ||||||||||| |||||      
T  5771631 gagcaatgttatttgaacaatcatttcttgtgacaaccttttagacaactaaattatacaaagaaatttaggtagtggcagaaaaatcaaagcaatagat 5771730  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||| || ||  | ||||||||||| ||||| ||||||||||    
T  5771731 agagagagaaagtaaaatgataatgtgagtatgagagagaaagttgtca 5771779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 17082674 - 17082774
Alignment:
Q  286 acaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttg 385  Q
    ||||||| ||||||||||   |||||| | |||||||||| |||||||||||  |||||||||||||||||||| |||||| |||| ||||| |||||||    
T  17082674 acaaccatattatacaaagaaatttaggtagtggcacaaatatcaaagtaat--agagagagaaaatagaagaataatgtgtgtatgagagagaaagttg 17082771  T
Q  386 tca 388  Q
    |||    
T  17082772 tca 17082774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 346
Target Start/End: Original strand, 47642492 - 47642598
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||| ||| ||| |||||||  ||  ||||||||||||||||||   |||||||| ||| ||||||||| |||| |||||    
T  47642492 aagagcaatgttatttgaacaaccattttttgggacaacttgttggacaaccaaattatacaaagaaatttagatagtgacacaaaaattaaagcaatag 47642591  T
Q  340 agagaga 346  Q
    | |||||    
T  47642592 aaagaga 47642598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 48859007 - 48858904
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||| ||||||||| ||| ||||||||||   ||  ||||| ||||||||||||   |||||||| ||| |||||||||||||| |||||||    
T  48859007 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttagatagtgacacaaaaatcaaagcaatagag 48858908  T
Q  342 agag 345  Q
    ||||    
T  48858907 agag 48858904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 405
Target Start/End: Complemental strand, 4858087 - 4857932
Alignment:
Q  249 gttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagagaga 348  Q
    ||||||||||||||| |||  ||||| || |  ||  ||||||| ||||||||||   |||||  | |||||||||| ||||||| ||||||||||||      
T  4858087 gttatttgaacaacctttttatgtgataatttattggacaaccacattatacaaagaaatttaagtagtggcacaaatatcaaagcaatagagagaga-- 4857990  T
Q  349 aaatagaagaacaatgtgagtataagagataaagttgtcaaaaa-tggttgttcaaat 405  Q
    || ||||||||||||||| | || ||||| |||||||||||||| || ||||||||||    
T  4857989 aagtagaagaacaatgtgtgcatgagagagaaagttgtcaaaaagtgattgttcaaat 4857932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 38878788 - 38878932
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||  |||  ||||||||||  ||  ||||| | |||||| |||   |||||| | ||| |||||||||||||| |||  ||    
T  38878788 gagcaatgttatttgaacaacatttttatgtgacaacttgttggacaactatattatataaagaaatttaggtagtgacacaaaaatcaaagcaat--ag 38878885  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    | ||| ||| |||||||||||||||  ||| ||||| ||||||||||    
T  38878886 aaagaaaaagtagaagaacaatgtgtatatgagagagaaagttgtca 38878932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 30439335 - 30439285
Alignment:
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    |||||||||||| ||| | ||||||||||| ||||||||||||||||||||    
T  30439335 agagagaaaataaaaggataatgtgagtatgagagataaagttgtcaaaaa 30439285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 23645520 - 23645446
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    |||||||||||| ||||  ||||||||||||  || || ||  | ||||||||||| ||||||||||||||||||||    
T  23645520 gtggcacaaaaaccaaaacaatagagagaga--aagtaaaaagataatgtgagtatgagagataaagttgtcaaaaa 23645446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 27687524 - 27687569
Alignment:
Q  361 aatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||    
T  27687524 aatgtgagtatgagagataaagttgtcacaaaatggttgtacaaat 27687569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 4776865 - 4776837
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagaga 344  Q
    |||||||||||||||||||||||||||||    
T  4776865 gtggcacaaaaatcaaagtaatagagaga 4776837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 5477149 - 5477213
Alignment:
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||| |||| ||||| ||||||||||| ||||| |||||||||| ||| ||||||| |||||    
T  5477149 agagagagaataaaagaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaat 5477213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 15470040 - 15470092
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    |||||||||||||| ||  | ||||||||||| ||||| ||||||||||||||    
T  15470040 agagagagaaaataaaaagataatgtgagtatgagagagaaagttgtcaaaaa 15470092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 21433384 - 21433432
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||||| ||  | ||||||||||||||||| ||||||||||    
T  21433384 agagagagaaaataaaaacataatgtgagtataagagagaaagttgtca 21433432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 33076228 - 33076159
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||| ||||||||||||||||  ||||||||| ||  | ||||||||||| | ||| ||||||||||    
T  33076228 tggcacaaatatcaaagtaatagaga--gagaaaataaaaatataatgtgagtatgatagagaaagttgtca 33076159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 45272146 - 45272210
Alignment:
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa-tggttgttcaaat 405  Q
    ||||||| |||| ||| | ||||||||||| ||||| |||||||||||||| ||||||| |||||    
T  45272146 agagagagaataaaaggataatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaat 45272210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 48220109 - 48220193
Alignment:
Q  319 gcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||||||||||| |||||||||| |  || || || || ||||||||||| ||||| |||||||||| ||||||| |||||||||    
T  48220109 gcacaaaaatcaaagaaatagagagata--aagtaaaa-aataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaat 48220193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 388
Target Start/End: Complemental strand, 49660276 - 49660219
Alignment:
Q  329 caaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||||  |||||| || || || ||||||||||| ||||||||||||||||    
T  49660276 caaagtaatagaga--gagaaagtaaaaaaataatgtgagtatgagagataaagttgtca 49660219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 11635419 - 11635566
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||     
T  11635419 aaagagcagtcttatttgaacaaccctttattgtgacaatttcttatacaaccaaattatacaaagagatttagatagtggcacaaaaatcaaagtaat- 11635517  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
     ||||||||||||||||||| |||||||| ||| ||||| ||||||||||    
T  11635518 -agagagagaaaatagaagagcaatgtgaatatgagagagaaagttgtca 11635566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 1287100 - 1286947
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| | |||||||| ||| ||||||||||||||||||     
T  1287100 aaagagcaatgttatttgaacaatcctttattgtgacaacttcttatacaactaaattatacaaaagaatttagatagtgacacaaaaatcaaagtaatc 1287001  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    ||||||||||||||| ||  | ||||| | |||  |||| ||||||||||||||    
T  1287000 gagagagagaaaataaaaagataatgtaaatatcggagagaaagttgtcaaaaa 1286947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 242 - 344
Target Start/End: Complemental strand, 17182282 - 17182180
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||    
T  17182282 gagcaatgttatttgaacaaccctttattatgacaacttcttatacaatcaaattatacaaagggatttagatagtggcataaaaatcaaagtaatagag 17182183  T
Q  342 aga 344  Q
    |||    
T  17182182 aga 17182180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 18064974 - 18065121
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||| ||||||||||||||||||  |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | |||||||||| ||||||| |||     
T  18064974 aaagatcaatgttatttgaacaacttttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaat- 18065072  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
     ||||||||||| ||||||||||||||| |||| ||||| ||||||||||    
T  18065073 -agagagagaaagtagaagaacaatgtgtgtatgagagaaaaagttgtca 18065121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 388
Target Start/End: Complemental strand, 33712506 - 33712360
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||| |||  ||| ||||||  ||  ||||||| ||||||||||   |||||| | || ||||||| ||||||| |  |     
T  33712506 aagagcaatgttatttgaacaacctttttatgtaacaacttgttggacaaccacattatacaaagaaatttaggtagttgcacaaatatcaaagca--ac 33712409  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||| ||||||||||||||| |||| ||||| ||||||||||    
T  33712408 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 33712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 8645492 - 8645348
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||| ||||||||||||| ||| ||||||||||   ||  ||||| ||||||||||||   |||||| | ||| | || ||||||||| |||||||    
T  8645492 gagcaatgatatttgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtgacgcataaatcaaagcaatagag 8645393  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||  || || ||| | ||||||||||| ||||| ||||||||||    
T  8645392 agaga--aagtaaaaggataatgtgagtatgagagagaaagttgtca 8645348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 5739648 - 5739795
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||||||||||||||||||||| || ||| || ||||||||  ||  |||| ||||||| | |||   | |||| | ||| |||||||||||||| ||||    
T  5739648 aaagagcaatgttatttgaacatccatttcttatgacaacttgttggacaatcaaattaaataaagaaaattaggtagtgacacaaaaatcaaagcaata 5739747  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    || |||||  || |||||| ||||| ||||||||||| | ||||||||||    
T  5739748 gaaagaga--aattagaaggacaatatgagtataagaaagaaagttgtca 5739795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 12588337 - 12588431
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagagagag----aaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa-tggttgttcaaat 405  Q
    |||||||||||||||||| |||||||||||||    ||| || ||||| ||||||| | | ||||| ||| |||||||||| |||||||||||||    
T  12588337 gtggcacaaaaatcaaagcaatagagagagagagaaaaagtaaaagaagaatgtgaatttgagagagaaaattgtcaaaaattggttgttcaaat 12588431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 1376472 - 1376404
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||| || ||||||||||||||||| ||| || ||  | ||||||||||||||||| ||||||||||    
T  1376472 cacaaatataaaagtaatagagagagataaagtaaaaatataatgtgagtataagagagaaagttgtca 1376404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 1384220 - 1384152
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||| || ||||||||||||||||| ||| || ||  | ||||||||||||||||| ||||||||||    
T  1384220 cacaaatataaaagtaatagagagagataaagtaaaaatataatgtgagtataagagagaaagttgtca 1384152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 17442888 - 17442843
Alignment:
Q  361 aatgtgagtataagagataaagttgt-caaaaatggttgttcaaat 405  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||    
T  17442888 aatgtgagtataagagagaaagttgtacaaaaatggttgtacaaat 17442843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 388
Target Start/End: Complemental strand, 10335647 - 10335590
Alignment:
Q  329 caaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||||  |||||| || || || ||||||||||| ||||||||||||||||    
T  10335647 caaagtaatagaga--gagaaagtaaaaaaataatgtgagtatgagagataaagttgtca 10335590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 30831940 - 30831805
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||| ||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  30831940 aagatcaatgttatttgaacaatcatttattgtgacaacttcttatacaatcaaattatacaaagggatttagatagtggcacaaaaatcaaagtaatag 30831841  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagaga 377  Q
    |||  |||||| |||||||||||||||||||| |||||    
T  30831840 aga--gagaaagtagaagaacaatgtgagtatgagaga 30831805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 241 - 388
Target Start/End: Original strand, 26480976 - 26481121
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||  |    
T  26480976 agagcaatgttatttgaacaaccctttattgtgacaacttcttatacaaccaaattatacaaagggatttagatagtgacacaaaaatcaaagtaat--a 26481073  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||| ||||| ||||| ||||| |||||||| ||| | ||| ||||||    
T  26481074 gagaaagaaagtagaaaaacaacgtgagtatgagaaagaaaattgtca 26481121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 388
Target Start/End: Complemental strand, 37003766 - 37003650
Alignment:
Q  270 tgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagt 369  Q
    |||||||||| ||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||  | ||||||||  ||||||||||||||||||    
T  37003766 tgtgacaacttcttatacaaccaaattatacaaaggggtttagatagtggcataaaaatcaaagtaat--aaagagagaatgtagaagaacaatgtgagt 37003669  T
Q  370 ataagagataaagttgtca 388  Q
    || ||||| ||||||||||    
T  37003668 atgagagagaaagttgtca 37003650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 11965980 - 11965833
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||||||||||||||||| |||  ||||||||||  ||  ||||||| |||||||| |   |||||||| |||||||||||||||||| ||||    
T  11965980 aaagagcaatgttatttgaacaacctttttatgtgacaacttgttggacaaccacattatacatagaaatttagatagtggcacaaaaatcaaagcaata 11965881  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||  |||||| ||||||||||||||| |||| ||||| |||| |||||    
T  11965880 gaga--gagaaagtagaagaacaatgtgtgtatgagagagaaagctgtca 11965833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 238 - 392
Target Start/End: Original strand, 36587354 - 36587504
Alignment:
Q  238 gaaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaat 337  Q
    |||||||||||||||||||||||||| ||| || |||||||   ||  ||||| ||||||||||||   |||||||| |||||||||||||||||| |||    
T  36587354 gaaagagcaatgttatttgaacaaccatttcttctgacaaccttttggacaactaaattatacaaagaaatttagatagtggcacaaaaatcaaagcaat 36587453  T
Q  338 agagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    ||||||||||    || ||  | ||||||||||| ||||| ||||||||||||||    
T  36587454 agagagagag----taaaatgataatgtgagtatgagagagaaagttgtcaaaaa 36587504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 388
Target Start/End: Original strand, 37316700 - 37316846
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||| |||  | ||||||||  ||  ||||||| ||||||||||   |||||| | ||| |||||| ||||||| |||      
T  37316700 aagagcaatgttatttgaacaacctttttctatgacaacttgttggacaaccacattatacaaagaaatttaggtagtgacacaaatatcaaagcaat-- 37316797  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||| ||||||||||||||| |||| ||||| ||||||||||    
T  37316798 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 37316846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 37731087 - 37731231
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||| |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | |||||||||| ||||||| |||  ||    
T  37731087 gagcaatgttatttgaacaacctttttatgtgacaacttgttgcacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaat--ag 37731184  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||| |||| ||||||||||||||| |||| ||||| ||| ||||||    
T  37731185 agagcgaaagtagaagaacaatgtgtgtatgagagagaaaattgtca 37731231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 14872058 - 14871949
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||||| |||||||||||||||||| ||| |||| ||||||  ||| |||| |||||||||||||   |||||| | |||||||||||||||||  ||||    
T  14872058 aaagagaaatgttatttgaacaaccatttcttgtaacaacttgttagacaatcaaattatacaaagaaatttaggtagtggcacaaaaatcaaaacaata 14871959  T
Q  339 gagagagaga 348  Q
    ||||||||||    
T  14871958 gagagagaga 14871949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 392
Target Start/End: Complemental strand, 44239220 - 44239072
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||| ||||||||||||| |  ||  ||||| ||||||||||||   ||||||   ||| |||||||||||||| |||  ||    
T  44239220 gagcaatgttatttgaacaaccatttattgtgacaattttttggacaactaaattatacaaagaaatttaggcagtgacacaaaaatcaaagcaat--ag 44239123  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    ||||| |||||| || || ||||||| ||||| ||| ||| ||||||||||    
T  44239122 agagataaaataaaataataatgtgaatataaaagagaaaattgtcaaaaa 44239072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 388
Target Start/End: Complemental strand, 31578619 - 31578474
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    ||||||||| ||||||||||| | ||| |||||||||||  ||  ||||| || |||||||||   |||||| | ||| |||||||||||||| |||  |    
T  31578619 agagcaatgatatttgaacaatcatttcttgtgacaacttgttggacaactaacttatacaaagaaatttaggtagtgacacaaaaatcaaagcaat--a 31578522  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||| ||| || ||||| ||||||||||| ||||| ||||||||||    
T  31578521 gagagataaagtaaaagaataatgtgagtatgagagaaaaagttgtca 31578474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 14877176 - 14877083
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaa 332  Q
    |||||| |||||||||||||||||| ||| |||||||||||  ||| |||||||||||  |||||   |||||| | |||||||||||||||||    
T  14877176 aaagagaaatgttatttgaacaaccatttcttgtgacaacttgttagacaaccaaatttaacaaagaaatttaggtagtggcacaaaaatcaaa 14877083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 370
Target Start/End: Complemental strand, 18510857 - 18510733
Alignment:
Q  244 gcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagag 343  Q
    |||||||||||||||||||  ||| ||||||||||   ||| |||||||||| |||||||   |||||| |  || |||||||||||||| | |  ||||    
T  18510857 gcaatgttatttgaacaacattttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggtaatgacacaaaaatcaaagaagt--agag 18510760  T
Q  344 agagaaaatagaagaacaatgtgagta 370  Q
    ||||||| |||||| ||||||||||||    
T  18510759 agagaaagtagaaggacaatgtgagta 18510733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 12784359 - 12784430
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||| |||||||||||||||||||||||||||| || ||  | || |||||||| ||||| ||||||||||    
T  12784359 tggcataaaaatcaaagtaatagagagagagaaagtaaaaatataacgtgagtatgagagagaaagttgtca 12784430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 332
Target Start/End: Original strand, 39234058 - 39234157
Alignment:
Q  233 taatagaaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaa 332  Q
    ||||| |||| ||| || ||||||||||||  ||| ||||||||||   ||| |||||||||| |||||||   |||||| |||||||||||||||||||    
T  39234058 taatataaagggcattgatatttgaacaacattttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggtggtggcacaaaaatcaaa 39234157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 19916761 - 19916695
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||| |||||| |||||||||||||  || ||||||||||||||| |||| ||||| ||||||||||    
T  19916761 cacaaatatcaaaataatagagagaga--aagtagaagaacaatgtgtgtatgagagagaaagttgtca 19916695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 10060443 - 10060483
Alignment:
Q  365 tgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  10060443 tgagtatgagagataaagttgttaaaaatggttgttcaaat 10060483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 37737982 - 37738026
Alignment:
Q  361 aatgtgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||||    
T  37737982 aatgtgagtatgagagagaaagttgtcgaaaatggttgttcaaat 37738026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 14877047 - 14876997
Alignment:
Q  338 agagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||||||||||  || ||||||||| ||||| ||||||||||    
T  14877047 agagagagagaaaatagaagggcagtgtgagtatgagagagaaagttgtca 14876997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 27695973 - 27696007
Alignment:
Q  371 taagagataaagttgtcaaaaatggttgttcaaat 405  Q
    ||||||| |||||||||||||||||||||||||||    
T  27695973 taagagagaaagttgtcaaaaatggttgttcaaat 27696007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 29449318 - 29449251
Alignment:
Q  319 gcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||||||||||||||||||  || || ||  | ||||||||||| ||||| ||||||||||    
T  29449318 gcacaaaaatcaaagtaatagagagaga--aagtaaaaatataatgtgagtatgagagagaaagttgtca 29449251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 1079010 - 1079071
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaa 303  Q
    |||||||||||| ||||||||| ||| ||||||||||   ||| ||||| ||||||||||||    
T  1079010 gagcaatgttatatgaacaaccatttcttgtgacaaccttttagacaactaaattatacaaa 1079071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 2427886 - 2427947
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaa 303  Q
    |||||||||||||||||||||| ||| ||||||||| |  ||  ||||| ||||||||||||    
T  2427886 gagcaatgttatttgaacaaccattttttgtgacaatttgttggacaactaaattatacaaa 2427947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 384
Target Start/End: Complemental strand, 8847669 - 8847531
Alignment:
Q  245 caatgttatttgaacaaccctttat-tgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagag 343  Q
    ||||||||||||||||| | ||| | ||||||||||  ||  ||||||  ||||||||||   |||||||| |||| | ||| ||||||| |||||||||    
T  8847669 caatgttatttgaacaatcttttctatgtgacaacttgttggacaaccgcattatacaaagaaatttagatagtggtataaatatcaaagcaatagagag 8847570  T
Q  344 agagaaaatagaagaacaatgtgagtataagagataaagtt 384  Q
    |  |||| |||||||| |||||| |||| ||| | ||||||    
T  8847569 a--gaaagtagaagaataatgtgtgtatgagaaagaaagtt 8847531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 9207699 - 9207629
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||| ||||| ||||||||||||  || || || || ||||||||||| ||||| ||||||||||    
T  9207699 gtggcacaaaaaccaaagcaatagagagaga--aagtaaaaaaataatgtgagtatgagagagaaagttgtca 9207629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 349
Target Start/End: Complemental strand, 33414549 - 33414520
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaa 349  Q
    ||||||||||||||||||||||||||||||    
T  33414549 cacaaaaatcaaagtaatagagagagagaa 33414520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 245 - 388
Target Start/End: Original strand, 27168572 - 27168713
Alignment:
Q  245 caatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagaga 344  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||  |||||    
T  27168572 caatgttatttgaacaaccctttattatgacaacttcttatacaaccaaattatacaaagggatttaaatagtggcacaaaaatcaaagtaat--agaga 27168669  T
Q  345 gagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||| || |||||||| ||| ||||||| ||||| ||||||||||    
T  27168670 gaggaagtagaagaataatatgagtatgagagagaaagttgtca 27168713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 33472304 - 33472404
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    ||||| |||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||  ||||||||| |||  |||||||||||||||||||    
T  33472304 aagagtaatgttatttaaacaaccctttattatgacaacttcttatacaatcaaattatacaaagagatttagatagtgatacaaaaatcaaagtaatag 33472403  T
Q  340 a 340  Q
    |    
T  33472404 a 33472404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 9862709 - 9862573
Alignment:
Q  250 ttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaa-atggatttagatggtggcacaaaaatcaaagtaatagagagagaga 348  Q
    |||||||||||||| ||||||||||||||  ||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||   |||||| |    
T  9862709 ttatttgaacaaccttttattgtgacaacctcttatgcaaccaaattatacaacatag-tttagatagtggcacaaaaatcaaagtaat--tgagagaaa 9862613  T
Q  349 aaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||| ||| ||||||| | ||| ||||| ||||||||||    
T  9862612 aaataaaaggacaatgttaatatgagagagaaagttgtca 9862573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 34307428 - 34307572
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||| ||||| |||||||||||  ||  ||||||||||||||||||   |||||| | |||  ||||||| ||||| |||  ||    
T  34307428 gagcaatgttatttgaacaatcctttcttgtgacaacttattggacaaccaaattatacaaagaaatttaggtagtgatacaaaaaccaaagcaat--ag 34307525  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    | ||||||| |||||||||||||||||||| | ||| ||||||||||    
T  34307526 aaagagaaagtagaagaacaatgtgagtatgaaagagaaagttgtca 34307572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 29526048 - 29525943
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    |||||||||||||||| |||||| |||||||||||||||  ||  ||||||||||| ||||||   |||||||| |||||||||||||||||  ||||||    
T  29526048 agagcaatgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaaaaaatttagatagtggcacaaaaatcaaaacaataga 29525949  T
Q  341 gagaga 346  Q
    ||||||    
T  29525948 gagaga 29525943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 4494121 - 4494268
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||||||||||||||||| ||| || ||||||||  ||  ||||||||||||||||||   |||||| | ||| |||||||||||||| ||||    
T  4494121 aaagagcaatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaata 4494220  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    || |||||  || || ||  |  |||||||||||||||| ||||||||||    
T  4494221 gaaagaga--aagtaaaatgatgatgtgagtataagagagaaagttgtca 4494268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 32363118 - 32362973
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||||| |||||||||||||||||| |||  |||||||| |  ||  ||||||| ||||||||||  ||||||| | |||||| ||| ||||||| ||||    
T  32363118 aaagagaaatgttatttgaacaaccttttcatgtgacaatttattggacaaccacattatacaaagagatttaggtagtggcataaatatcaaagcaata 32363019  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||| || |||    ||||||||||| |||| ||||||||||||||||    
T  32363018 gagagaaagtaaa----agaacaatgtgtgtatgagagataaagttgtca 32362973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 374
Target Start/End: Original strand, 39713920 - 39714054
Alignment:
Q  238 gaaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaat 337  Q
    |||||| ||||||||||||||||||| ||| |||||| || |  ||  ||||||||||||||||||    ||||||| ||  |||||||||||||| |||    
T  39713920 gaaagaacaatgttatttgaacaaccattttttgtgataatttgttggacaaccaaattatacaaaaaattttagatagtaacacaaaaatcaaagcaat 39714019  T
Q  338 agagagagagaaaatagaagaacaatgtgagtataag 374  Q
      ||||||||||| || ||||||||||||| ||||||    
T  39714020 --agagagagaaagtataagaacaatgtgattataag 39714054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 388
Target Start/End: Complemental strand, 38671797 - 38671657
Alignment:
Q  246 aatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagag 345  Q
    |||||||||||||||||| |||||||| | |||| | |||||||  |||||||| |||  ||||||||| |||  |||||||| |||||||||  ||||     
T  38671797 aatgttatttgaacaaccatttattgtaataacttcctatacaattaaattatataaagtgatttagatagtgatacaaaaattaaagtaata--gagaa 38671700  T
Q  346 agaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    | ||| || ||||||||||||||||  ||||| ||| ||||||    
T  38671699 ataaagtataagaacaatgtgagtacgagagagaaaattgtca 38671657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 28700569 - 28700482
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||||||| ||||| ||||||||||||  || || ||  | ||||||||||| |||||||||||||||| |||||||||||||||||    
T  28700569 tggcacaaaaaccaaagcaatagagagaga--aagtaaaaacataatgtgagtatgagagataaagttgtcaaaaaatggttgttcaaat 28700482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 377
Target Start/End: Original strand, 41443075 - 41443211
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||| ||||||||||| | ||| ||||||||||   ||  ||||| ||||||||||||   |||||| |  | ||||||||||||||  |||     
T  41443075 aaagagcaatgatatttgaacaatcatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtatttgcacaaaaatcaaaacaat- 41443173  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagaga 377  Q
     ||||||||||| || ||||| ||||||||||| |||||    
T  41443174 -agagagagaaagtaaaagaataatgtgagtatgagaga 41443211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 405
Target Start/End: Original strand, 55361199 - 55361283
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaa-aaatggttgttcaaat 405  Q
    |||||||| ||||| |||||||  ||||||| || || || ||||||||||||||||| ||||||||||| |||||||||| |||||    
T  55361199 cacaaaaaccaaagcaatagag--agagaaagtaaaaaaataatgtgagtataagagagaaagttgtcaagaaatggttgtacaaat 55361283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 346
Target Start/End: Complemental strand, 31104850 - 31104744
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||  ||| ||||||||| |  ||  ||||| ||||||||| ||   |||||| | ||| |||||||||||||  |||||    
T  31104850 aagagcaatgttatttgaacaactttttcttgtgacaatttgtttgacaactaaattatacgaagaaatttaggtagtgacacaaaaatcaaaacaatag 31104751  T
Q  340 agagaga 346  Q
    |||||||    
T  31104750 agagaga 31104744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 48152255 - 48152317
Alignment:
Q  324 aaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||| |||||||||||||  |||||||||| || || ||||||||||| ||||||||||||||||    
T  48152255 aaaaccaaagtaatagag--agagaaaataaaaaaataatgtgagtatgagagataaagttgtca 48152317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 34064074 - 34064135
Alignment:
Q  323 aaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgt 386  Q
    |||||||||||||||||||| |||  || ||||| || ||||||||||| ||||||||||||||    
T  34064074 aaaaatcaaagtaatagagaaaga--aagtagaaaaataatgtgagtatgagagataaagttgt 34064135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 392
Target Start/End: Complemental strand, 42424276 - 42424245
Alignment:
Q  361 aatgtgagtataagagataaagttgtcaaaaa 392  Q
    ||||||||||||||||||||||||||||||||    
T  42424276 aatgtgagtataagagataaagttgtcaaaaa 42424245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 9753302 - 9753240
Alignment:
Q  344 agagaaaatagaagaacaatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    |||||||||| ||  ||||||||||||| ||||||||| |||||| |||||| ||||||||||    
T  9753302 agagaaaataaaaacacaatgtgagtatgagagataaaattgtcacaaaatgattgttcaaat 9753240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 51464258 - 51464308
Alignment:
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    ||||||| ||||  |||| ||||||||||| ||||||||||||||||||||    
T  51464258 agagagagaatacgagaataatgtgagtatgagagataaagttgtcaaaaa 51464308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 5244338 - 5244268
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||| ||||| ||||||||||||  || || || || ||||||||||| ||||| ||||||||||    
T  5244338 gtggcacaaaaaccaaagcaatagagagaga--aagtaaaaaaataatgtgagtatgagagagaaagttgtca 5244268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 25188313 - 25188418
Alignment:
Q  244 gcaatgttatttgaacaaccctttatt-gtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagaga 342  Q
    |||||||||||||||||||| ||| || ||||||||   ||| ||||| |||| |||||||   |||||| |  || ||| |||||||||| ||||||||    
T  25188313 gcaatgttatttgaacaaccttttttttgtgacaacctattagacaactaaataatacaaagaaatttaggtaatgacaccaaaatcaaagcaatagaga 25188412  T
Q  343 gagaga 348  Q
    ||||||    
T  25188413 gagaga 25188418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 32205682 - 32205617
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    |||||||||||||| ||  | |||||| |||| |||||||||||||| ||| ||| ||||||||||    
T  32205682 agagagagaaaataaaaagataatgtgggtatgagagataaagttgtaaaacatgattgttcaaat 32205617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 33939343 - 33939275
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||| ||||| |||||||||||||||| || ||  | ||||||| ||| ||||| ||||||||||    
T  33939343 cacaaaaaccaaagcaatagagagagagaaagtaaaaagataatgtgaatatgagagagaaagttgtca 33939275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 34456974 - 34456870
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||| |||||||||||   ||| |||||||||    ||| ||||| ||||||||||||   |||||| |  |||||||||||| |||| |||||||    
T  34456974 gagcaatgatatttgaacaattatttcttgtgacaatcttttagacaactaaattatacaaagaaatttaggtattggcacaaaaattaaagcaatagag 34456875  T
Q  342 agaga 346  Q
    |||||    
T  34456874 agaga 34456870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 41670565 - 41670613
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||||| || |  ||||||||||| ||||||||||||||||    
T  41670565 agagagagaaaataaaaaattaatgtgagtatgagagataaagttgtca 41670613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 44813245 - 44813173
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||| | ||| |||||||||||||||| |  || || ||||||||||| ||||| |||| |||||    
T  44813245 gtggcacaaaaacccaagcaatagagagagagaaagttaaaaaataatgtgagtatgagagagaaagctgtca 44813173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 241 - 388
Target Start/End: Complemental strand, 11954616 - 11954471
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    ||||||||||||||||||||||| |||||| |||||||| |||||||||| ||||||||||||  || |||||| |||||||||||||||||||||||      
T  11954616 agagcaatgttatttgaacaaccatttattttgacaacttcttatacaactaaattatacaaagtgacttagatagtggcacaaaaatcaaagtaata-- 11954519  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||| |||||||| || |||||||||||||| ||||| ||||||||||    
T  11954518 gagaaagaaaataaaataacaatgtgagtatgagagagaaagttgtca 11954471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 242 - 405
Target Start/End: Original strand, 16971987 - 16972148
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||| |||||||||   || ||||||||||||||||||  ||    
T  16971987 gagcaatgttatttgaacaatcatttattgtgacaacttcttatacaatcaaattatacaaagggatttagagactgacacaaaaatcaaagtaat--ag 16972084  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    ||||||||| |||||||||||||| | ||| ||||| || ||||| ||||||||||||| ||||    
T  16972085 agagagaaagtagaagaacaatgtaaatatgagagagaaggttgtaaaaaatggttgttaaaat 16972148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 405
Target Start/End: Complemental strand, 21211001 - 21210840
Alignment:
Q  243 agcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagaga 342  Q
    ||||||||||||||||||||| |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | || | |||||||| |||| ||||||||    
T  21211001 agcaatgttatttgaacaacctttttatgtgacaacttattgaacaaccacattatacaaagaaatttaggtagtagtacaaaaattaaagcaatagaga 21210902  T
Q  343 gagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa-tggttgttcaaat 405  Q
      |||||| |||||||| |||||| |||| ||||| |||||||||||||| |||||||||||||    
T  21210901 --gagaaagtagaagaataatgtgtgtatgagagagaaagttgtcaaaaagtggttgttcaaat 21210840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 386
Target Start/End: Original strand, 42446180 - 42446320
Alignment:
Q  244 gcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagag 343  Q
    |||||||||||||||||||  ||| ||||||||||   ||| |||||||||| |||||||   |||||| |  ||||||||||||||||| |||  ||||    
T  42446180 gcaatgttatttgaacaacattttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggtaatggcacaaaaatcaaagcaat--agag 42446277  T
Q  344 agagaaaatagaagaacaatgtgagtataagagataaagttgt 386  Q
    ||| ||| |||||| ||||||||||||  ||||| ||||||||    
T  42446278 agaaaaagtagaaggacaatgtgagtaagagagagaaagttgt 42446320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 388
Target Start/End: Original strand, 35075474 - 35075607
Alignment:
Q  251 tatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagagagaaa 350  Q
    ||||||||||||||||||||| ||||||| |||| |||||||   ||||||||   ||||||||  ||| ||||||||||||| |||||||    |||||    
T  35075474 tatttgaacaaccctttattgggacaacttcttagacaaccatcatatacaaacaaatttagatattggtacaaaaatcaaagcaatagag----agaaa 35075569  T
Q  351 atagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||| ||  | ||||||||||| ||||| ||||||||||    
T  35075570 ataaaaatataatgtgagtatgagagaaaaagttgtca 35075607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 31748520 - 31748416
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||| ||||||||||||||| | ||| |||||||||||  ||  |||| |||||||||||||   |||||| | || ||||||||||||||| ||||||     
T  31748520 gagcgatgttatttgaacaatcattttttgtgacaacttattggacaatcaaattatacaaagaaatttaggttgtagcacaaaaatcaaagcaatagat 31748421  T
Q  342 agaga 346  Q
    |||||    
T  31748420 agaga 31748416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 32872779 - 32872822
Alignment:
Q  236 tagaaagagcaatgttatttgaacaaccctttattgtgacaact 279  Q
    |||| ||||||||||||||||||||||||||| |||||||||||    
T  32872779 tagatagagcaatgttatttgaacaaccctttcttgtgacaact 32872822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 40364676 - 40364608
Alignment:
Q  318 ggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||||||||||||||||  |||||| |||||  | ||||||||||| ||||| ||||||||||    
T  40364676 ggcacaaaaatcaaagtaatagaga--gagaaagtagaaatataatgtgagtatgagagagaaagttgtca 40364608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 19981923 - 19981977
Alignment:
Q  292 aaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagaga 346  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||||| |||||    
T  19981923 aaattatacaaaaaaatttagatagtggcacaaaaatcaaagtaatagaaagaga 19981977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 5168292 - 5168222
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||||||||| ||||||||||||  || || ||  | ||||||||||| ||||||||||||||||    
T  5168292 gtggcacaaaaatcaaagcaatagagagaga--aagtaaaaagataatgtgagtatgagagataaagttgtca 5168222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 388
Target Start/End: Original strand, 17097688 - 17097833
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    ||||| ||||||||||||||| || ||| ||||||||| |  ||  ||||| ||||||||||||   | |||| | ||| ||||||||||||||||||      
T  17097688 aagagtaatgttatttgaaca-ccatttcttgtgacaatttgttggacaactaaattatacaaagaaaattaggtagtgacacaaaaatcaaagtaat-- 17097784  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||| ||||||| |||||  ||||||||||||| ||| | ||| ||||||    
T  17097785 agaaagagaaagtagaatgacaatgtgagtatgagatagaaaattgtca 17097833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 388
Target Start/End: Original strand, 13089672 - 13089813
Alignment:
Q  245 caatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagaga 344  Q
    ||||||||||||||||||| ||| || |||||||   ||  ||||  ||||||||||||   |||||| | ||| |||||||||||||| |||  |||||    
T  13089672 caatgttatttgaacaaccatttcttatgacaaccttttgaacaattaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaat--agaga 13089769  T
Q  345 gagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    || ||| |||||  | ||||||||||| | ||| ||||||||||    
T  13089770 gataaagtagaatgataatgtgagtatgaaagagaaagttgtca 13089813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 612004 - 611904
Alignment:
Q  286 acaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttg 385  Q
    ||||| ||||||||||||   |||||| | ||| |||||||||||||| | ||||||||||  ||||| ||  | ||||||||||| ||||| |||||||    
T  612004 acaactaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcagtagagagaga--aaataaaatgataatgtgagtatgagagagaaagttg 611907  T
Q  386 tca 388  Q
    |||    
T  611906 tca 611904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 39195821 - 39195757
Alignment:
Q  322 caaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||| ||||||||||||  || ||||||||||||||  |||| ||||| ||||||||||    
T  39195821 caaaaatcaaagcaatagagagaga--aagtagaagaacaatgtctgtatgagagagaaagttgtca 39195757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 405
Target Start/End: Complemental strand, 14923135 - 14923093
Alignment:
Q  363 tgtgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||    
T  14923135 tgtgagtatgagagagaaagttgtaaaaaatggttgttcaaat 14923093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 8097357 - 8097293
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagtt 384  Q
    |||||||||||||| |||||||||||| |||||| || || ||| ||||||| || || ||||||    
T  8097357 cacaaaaatcaaagcaatagagagagaaaaaataaaaaaataatatgagtatgagtgagaaagtt 8097293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 12739912 - 12739852
Alignment:
Q  286 acaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagaga 346  Q
    ||||||||||||||||||   |||||| | |  ||||||||||||||| ||||||||||||    
T  12739912 acaaccaaattatacaaagaaatttaggtagaagcacaaaaatcaaagcaatagagagaga 12739852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 12802735 - 12802675
Alignment:
Q  286 acaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagaga 346  Q
    ||||||||||||||||||   |||||| | |  ||||||||||||||| ||||||||||||    
T  12802735 acaaccaaattatacaaagaaatttaggtagaagcacaaaaatcaaagcaatagagagaga 12802675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 22098364 - 22098295
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||| ||||||||||||||||||||  || || ||  | ||||||||||| ||||| ||||||||||    
T  22098364 tggcacaaatatcaaagtaatagagagaga--aagtaaaaatataatgtgagtatgagagagaaagttgtca 22098295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 384
Target Start/End: Complemental strand, 42652777 - 42652639
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||| |||||||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  42652777 gagcaatgttatttgaacaactctttattgtgacaactttttatacaactaaattatataaatggatttagatagtggcacgaaaattaaagtaatagag 42652678  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagtt 384  Q
    |||  |    |||||||||||||||||||| ||||| ||||||    
T  42652677 agaatg----tagaagaacaatgtgagtatcagagagaaagtt 42652639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 36874001 - 36874121
Alignment:
Q  243 agcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagaga 342  Q
    |||||||||||||||||||||||||||||||| || |  |||||||||||||||||| ||| |||||||||| |||| |||||||||||| ||||    |    
T  36874001 agcaatgttatttgaacaaccctttattgtgataattttttatacaaccaaattatataaagggatttagatagtggtacaaaaatcaaaataat----a 36874096  T
Q  343 gagagaaaatagaagaacaatgtga 367  Q
    |||||||||||||||||||||||||    
T  36874097 gagagaaaatagaagaacaatgtga 36874121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 241 - 388
Target Start/End: Original strand, 33451451 - 33451594
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    ||||||||||||||||||||||||||| |||||||||||  ||| |||| ||||||||||||| | | |||| | |||||||||||||||||| |||  |    
T  33451451 agagcaatgttatttgaacaaccctttcttgtgacaacttgttagacaatcaaattatacaaa-gaaattaggtagtggcacaaaaatcaaagcaat--a 33451547  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||| |||||| ||||||||||||| ||||| ||||||||||    
T  33451548 gagagagaaagtagaag-acaatgtgagtatgagagagaaagttgtca 33451594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 44091070 - 44090926
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||| |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | ||| |||||||||||||| |||||||    
T  44091070 gagcaatgttatttgaacaaccttttcatgtgacaactttttggacaaccacattatacaaagaaatttaggtagtgacacaaaaatcaaagcaatagag 44090971  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |  |||||| ||||||||||||||| |||| ||||| ||| ||||||    
T  44090970 a--gagaaagtagaagaacaatgtgtgtatgagagagaaaattgtca 44090926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 388
Target Start/End: Complemental strand, 1068791 - 1068646
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    ||||||||||||||||||||||| |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | |||  ||||| ||||||| ||||||    
T  1068791 agagcaatgttatttgaacaacctttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtgttacaaatatcaaagcaataga 1068692  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||  |||||| ||||||||||||||| |||| ||||| ||||||||||    
T  1068691 ga--gagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 1068646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 34435624 - 34435768
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||| |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | |||||||||| ||||||| |||  ||    
T  34435624 gagcaatgttatttgaacaacctttttatgtgacaacttgttgcacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaat--ag 34435721  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||| |||| ||||||||||||||| |||| ||||| ||| ||||||    
T  34435722 agagcgaaagtagaagaacaatgtgtgtatgagagagaaaattgtca 34435768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 25987671 - 25987818
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||||| |||||||||||||||||| ||| ||||||||||   ||  ||||| ||||||||||||   |||||| | ||| |||||||||||||| |||     
T  25987671 aaagagtaatgttatttgaacaaccatttcttgtgacaaccttttgaacaactaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaat- 25987769  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
     ||||||| ||| |||||  | ||||||||||| ||||||||||||||||    
T  25987770 -agagagataaagtagaatgataatgtgagtatgagagataaagttgtca 25987818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 15716860 - 15717007
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||||||||||||||||  |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | |||  ||||| ||||||| |||     
T  15716860 aaagagcaatgttatttgaacaacttttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtgatacaaatatcaaagcaat- 15716958  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
     ||||||||||| ||||||||||||||  |||| ||||| ||||||||||    
T  15716959 -agagagagaaagtagaagaacaatgtatgtatgagagaaaaagttgtca 15717007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 388
Target Start/End: Original strand, 33107752 - 33107898
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||| |||  |||||||| |  ||  ||||||| ||||||||||   |||||| | || ||||||| ||||||| || ||    
T  33107752 aagagcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagttgcacaaatatcaaagcaacag 33107851  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||  ||||||| ||||||||||||||| |||| || || ||||||||||    
T  33107852 ag--agagaaagtagaagaacaatgtgtgtatgagggagaaagttgtca 33107898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 347
Target Start/End: Original strand, 28772011 - 28772118
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||| ||||||||||||| ||| ||||||||||   ||  ||||| ||||||||||||   |||||| | |||||||||||||||||  ||||     
T  28772011 aagagcaatgatatttgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcacaaaaatcaaaacaataa 28772110  T
Q  340 agagagag 347  Q
    ||||||||    
T  28772111 agagagag 28772118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 388
Target Start/End: Complemental strand, 26027082 - 26026936
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    ||||||||||||||||||||| |  ||| |||||||||||  ||   |||||||||||||||||   |||||||| |||  |||||||| |||| |||      
T  26027082 aagagcaatgttatttgaacagctatttcttgtgacaacttgttggccaaccaaattatacaaagaaatttagatagtgatacaaaaattaaagcaat-- 26026985  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||| |||||||||| ||  | ||||||||||| ||| | ||||||||||    
T  26026984 agaaagagaaaataaaatgataatgtgagtatgagaaagaaagttgtca 26026936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 387
Target Start/End: Complemental strand, 12241258 - 12241113
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||  |||  ||||| || |  ||  ||||||| ||||||||||   |||||||| ||| || ||||||||||| |||||    
T  12241258 aagagcaatgttatttgaacaacttttttatgtgataatttgttggacaaccacattatacaaagaaatttagatagtgacataaaaatcaaagcaatag 12241159  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtc 387  Q
    ||||| |  |  |||||||||||||||  ||| | |||||||||||||    
T  12241158 agagata--atgtagaagaacaatgtgtatatgaaagataaagttgtc 12241113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 388
Target Start/End: Complemental strand, 44061902 - 44061757
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    |||| |||||||||||||||||  ||| |||||| || |  ||  ||||||||||||||||||   |||||||| ||| |||||||||||||| |  | |    
T  44061902 agagtaatgttatttgaacaactatttcttgtgataatttgttggacaaccaaattatacaaagaaatttagatagtgacacaaaaatcaaagca--aca 44061805  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    || ||||||| || ||  | ||||||||||| ||||| ||||||||||    
T  44061804 gaaagagaaagtaaaatgataatgtgagtatgagagagaaagttgtca 44061757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 346
Target Start/End: Original strand, 2730849 - 2730952
Alignment:
Q  243 agcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagaga 342  Q
    ||||||| ||||||||||||  ||| ||||||||||   ||  | ||| |||||||||||||  |||||||| |||||||||||||||||| | | ||||    
T  2730849 agcaatgatatttgaacaacaatttcttgtgacaaccttttgaataactaaattatacaaataaatttagatagtggcacaaaaatcaaagcagttgaga 2730948  T
Q  343 gaga 346  Q
    ||||    
T  2730949 gaga 2730952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 386
Target Start/End: Complemental strand, 4672185 - 4672033
Alignment:
Q  232 ataatagaaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaa 331  Q
    ||||||||||| ||| || ||||||||||||  ||| |||||||| |   ||| |||||||||| |||||||   ||||||  ||||| |||||||||||    
T  4672185 ataatagaaagggcattgatatttgaacaactttttcttgtgacaccctattagacaaccaaataatacaaagaaatttaggcggtggtacaaaaatcaa 4672086  T
Q  332 agtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgt 386  Q
    |  | |   |||||||||| |||||| |||||||||||   ||||||||||||||    
T  4672085 aacatt--ggagagagaaagtagaaggacaatgtgagtgagagagataaagttgt 4672033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 5600918 - 5601018
Alignment:
Q  286 acaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttg 385  Q
    ||||||||||| ||||||   |||||||||||| |||||||||||||| |||  | ||||||||| ||||| ||  |||||||||| ||||| ||| |||    
T  5600918 acaaccaaattttacaaagaaatttagatggtgacacaaaaatcaaagcaat--aaagagagaaagtagaataatcatgtgagtatgagagaaaaaattg 5601015  T
Q  386 tca 388  Q
    |||    
T  5601016 tca 5601018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 5639702 - 5639602
Alignment:
Q  286 acaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttg 385  Q
    ||||||||||| ||||||   |||||||||||| |||||||||||||| |||  | ||||||||| ||||| ||  |||||||||| ||||| ||| |||    
T  5639702 acaaccaaattttacaaagaaatttagatggtgacacaaaaatcaaagcaat--aaagagagaaagtagaataatcatgtgagtatgagagaaaaaattg 5639605  T
Q  386 tca 388  Q
    |||    
T  5639604 tca 5639602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 42786620 - 42786691
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||||||| || ||||||||| ||| || ||  | ||||||||||||||||| ||||||||||    
T  42786620 tggcacaaaaatcaaagaaagagagagagaaaaagtaaaaatataatgtgagtataagagagaaagttgtca 42786691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 405
Target Start/End: Complemental strand, 37172244 - 37172081
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    ||||||||||||||||||||   ||| |||| |||| |  ||  ||||||||||||||||||   |||||| |  || ||||||||||||||||||   |    
T  37172244 gagcaatgttatttgaacaattttttcttgtaacaatttgttggacaaccaaattatacaaagaaatttaggtaatgacacaaaaatcaaagtaat--gg 37172147  T
Q  342 agagagaaaatagaagaacaatgtgagtataaga-gataaagttg-tcaaaaatggttgttcaaat 405  Q
    | |||||||||||||| ||| ||| ||||| ||| || ||||||| | |||||| |||||||||||    
T  37172146 aaagagaaaatagaaggacagtgtaagtatgagaggagaaagttgttaaaaaatagttgttcaaat 37172081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 405
Target Start/End: Complemental strand, 9630307 - 9630145
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||| ||||||  ||| ||||||||| |  ||| ||||| |||||||| |||   |||||| | |||  | ||||||||||| |||  ||    
T  9630307 gagcaatgttatttaaacaactattttttgtgacaatttgttagacaactaaattatataaagaaatttaggtagtgatataaaaatcaaagaaat--ag 9630210  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttg-tcaaaaatggttgttcaaat 405  Q
    ||| |||||||||||| ||||| | ||||| | ||| ||||||| | ||||||| ||||||||||    
T  9630209 agaaagaaaatagaaggacaatataagtatgaaagagaaagttgttaaaaaatgattgttcaaat 9630145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 41541944 - 41541879
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||| |||||| || || ||||||||||||||||| |||||||||| ||||||| |||||||||    
T  41541944 agagagataaaataaaa-aataatgtgagtataagagagaaagttgtcacaaaatggatgttcaaat 41541879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 41639763 - 41639829
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgt 386  Q
    |||||||||||||| |||||||||||||||| || ||  | ||||||||||| ||||| ||| ||||    
T  41639763 cacaaaaatcaaagcaatagagagagagaaagtaaaaatataatgtgagtatgagagaaaaaattgt 41639829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 7777145 - 7777211
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||| |||||||||||||||  ||||||| || ||  | ||||||||||||||||| ||||||||||    
T  7777145 cacaaatatcaaagtaatagag--agagaaagtaaaaatataatgtgagtataagagagaaagttgtca 7777211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 34186712 - 34186646
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||| ||||||||||||||||||  ||||| ||  | ||||||||||||| ||| ||||||||||    
T  34186712 cacaaaaaccaaagtaatagagagaga--aaataaaaagataatgtgagtataaaagagaaagttgtca 34186646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 39211108 - 39211063
Alignment:
Q  361 aatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||    
T  39211108 aatgtgagtatgagagagaaagttgtcaaaaaatggttgttcaaat 39211063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 25830208 - 25830277
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||| |||||||||||||||  ||||||| || ||  | ||||||||||| ||||| ||||||||||    
T  25830208 tggcacaaatatcaaagtaatagag--agagaaagtaaaaatataatgtgagtatgagagagaaagttgtca 25830277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 43397895 - 43397822
Alignment:
Q  311 agatggtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgt 386  Q
    |||| |||||||||||| |||||||||  ||| ||||||| || || || ||||||||||| ||||| ||||||||    
T  43397895 agatagtggcacaaaaaccaaagtaat--agaaagagaaagtaaaaaaataatgtgagtatgagagagaaagttgt 43397822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 44825547 - 44825482
Alignment:
Q  321 acaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||| ||||||||||||  || ||||  || ||||||||||| ||||||||| ||||||    
T  44825547 acaaaaatcaaagcaatagagagaga--aagtagataaataatgtgagtatgagagataaaattgtca 44825482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 45405915 - 45406004
Alignment:
Q  286 acaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagaga 377  Q
    |||||||||||||||||||  ||||| ||  |  |||||||||||||  |||||||  ||||||| ||||||  |||||||||||| |||||    
T  45405915 acaaccaaattatacaaataaatttatataataacacaaaaatcaaaacaatagag--agagaaagtagaagggcaatgtgagtatgagaga 45406004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 55266209 - 55266105
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||| ||    
T  55266209 gagcaatgttatttgaacaatcctttattgtgataacttcttatacaactaaattatataaatggatttagatagtgacacaaaaatcaaagtaataaag 55266110  T
Q  342 agaga 346  Q
    |||||    
T  55266109 agaga 55266105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 241 - 405
Target Start/End: Complemental strand, 5386557 - 5386394
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    ||||||||| ||||||||||||| ||| |||||||||||  ||| ||||| ||||||||||||   |||||||| ||  |||||||||||||| ||||||    
T  5386557 agagcaatgatatttgaacaaccatttcttgtgacaactttttagacaactaaattatacaaagaaatttagatagtaacacaaaaatcaaagcaataga 5386458  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtc-aaaaatggttgttcaaat 405  Q
    ||  |||||| || ||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  5386457 ga--gagaaagtaaaagaataatgtgagtatgagagagaaagttgtcaaaaaatggttgttcaaat 5386394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 240 - 388
Target Start/End: Complemental strand, 50050822 - 50050677
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||| ||||||||  |||||||||||||||  ||||||||| || ||||||||| |||||||||| |||||| ||||||||||||| |||    
T  50050822 aagagcaatgttatatgaacaactatttattgtgacaactttttatacaactaagttatacaaagggatttagatagtggcataaaaatcaaagtattag 50050723  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||   ||||||||||||||||| | ||| ||||| ||| ||||||    
T  50050722 agagag---aaatagaagaacaatgtaaatatgagagagaaaattgtca 50050677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 240 - 388
Target Start/End: Complemental strand, 51255932 - 51255786
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    ||||||||||||||||| |||||| |||||||||||||||  ||  ||||||||||| ||||||   |||||||| |||||||||||||||||| |||||    
T  51255932 aagagcaatgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggcacaaaaatcaaagcaatag 51255833  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||  |||||| ||||| ||  |||||||||| ||||| ||||||||||    
T  51255832 aga--gagaaagtagaataatcatgtgagtatgagagagaaagttgtca 51255786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 388
Target Start/End: Complemental strand, 39158291 - 39158145
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||| |||||||||||||||  ||  ||||||||||||||||||   |||||| | | |||||||||| ||||  |||      
T  39158291 aagagcaatgttatttgaacaaccatttattgtgacaacttattggacaaccaaattatacaaagaaatttaggtagcggcacaaaaaccaaaacaat-- 39158194  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||| ||||||| |||||||| ||||||||||| ||||| ||||||||||    
T  39158193 agaaagagaaagtagaagaataatgtgagtatgagagagaaagttgtca 39158145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 21014180 - 21014104
Alignment:
Q  243 agcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtgg 319  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||    
T  21014180 agcaatgttatttgaacaaccttttattgtgacaacttcttatacaaccaaattatacaaagggatttagatagtgg 21014104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 38519980 - 38519833
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||||||||||||||||| | |||| |||||||||||||||  ||  ||||||||||| ||||||   ||||| || |||||||||||||||||| ||||    
T  38519980 aaagagcaatgttatttgtataaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttaaatagtggcacaaaaatcaaagcaata 38519881  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||  |||||| ||||| ||  |||||||||| ||||| ||||||||||    
T  38519880 gaga--gagaaagtagaataatcatgtgagtatgagagagaaagttgtca 38519833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 389
Target Start/End: Complemental strand, 18316124 - 18315976
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||||||||||||||||| ||| || ||||||||  ||  ||||||||||||||||||   |||||| | ||| |||||||||||||| ||||    
T  18316124 aaagagcaatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaata 18316025  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaa 389  Q
    || |||||  || || ||  |  |||||||||||||||| |||||||||||    
T  18316024 gaaagaga--aagtaaaatgatgatgtgagtataagagagaaagttgtcaa 18315976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 370
Target Start/End: Original strand, 41262234 - 41262358
Alignment:
Q  244 gcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagag 343  Q
    |||||||||||||||||||| ||| ||||||||||   ||| |||||||||| |||||||   ||||||||  ||||||||||||||||| |||  ||||    
T  41262234 gcaatgttatttgaacaaccttttcttgtgacaacctattagacaaccaaataatacaaagaaatttagataatggcacaaaaatcaaagcaat--agag 41262331  T
Q  344 agagaaaatagaagaacaatgtgagta 370  Q
    | ||||| |||||| ||||||||||||    
T  41262332 aaagaaagtagaaggacaatgtgagta 41262358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 29227128 - 29227270
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||| |||  |||||||| |  ||  ||||||| ||||||||||   |||||| | ||| |||||| ||||||| |||||    
T  29227128 aagagcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccatattatacaaagaaatttaggtagtgacacaaatatcaaagcaatag 29227227  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagtt 384  Q
    ||  ||||||| ||||||||||||||| |||| ||||| ||||||    
T  29227228 ag--agagaaagtagaagaacaatgtgtgtatgagagagaaagtt 29227270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 377
Target Start/End: Original strand, 26600086 - 26600219
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||  |||  |||||||| |  ||  ||||||| ||||||||||  || |||||| ||||||||| ||| |||| |||||||    
T  26600086 gagcaatgttatttgaacaacatttttatgtgacaatttgttggacaaccacattatacaaaaagaattagatagtggcacaataataaaagcaatagag 26600185  T
Q  342 agagagaaaatagaagaacaatgtgagtataagaga 377  Q
    | |||  || ||||||||||||||| |||| |||||    
T  26600186 aaaga--aagtagaagaacaatgtgtgtatgagaga 26600219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 14443385 - 14443278
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||| ||||||||||||| ||| ||||||||||   ||  ||||| |||||||||||| | |||||| | |||||  |||||| |||| ||||    
T  14443385 aaagagcaatgatatttgaacaaccattttttgtgacaaccttttggacaactaaattatacaaaggaatttaggtagtggcgtaaaaattaaagcaata 14443286  T
Q  339 gagagaga 346  Q
    ||||||||    
T  14443285 gagagaga 14443278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 39606075 - 39605992
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaatggttgttca 402  Q
    |||||||||||| |||| ||||||||| ||  ||||| ||  | ||||||||||| ||||| ||||||||||||||||||||||||    
T  39606075 tggcacaaaaattaaagcaatagagaggga--aaataaaaagataatgtgagtatgagagagaaagttgtcaaaaatggttgttca 39605992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 48494898 - 48494962
Alignment:
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa-tggttgttcaaat 405  Q
    ||||||||  ||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||    
T  48494898 agagagaatgtagaagaacaatgtgtgtatgagagataaagttgttaaaaagtggttgttcaaat 48494962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 342
Target Start/End: Original strand, 19651803 - 19651906
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||||| |||| ||||||||||||| ||| ||||||||||   ||  ||||| ||||||||||||   |||||| | ||| || ||||||||||||||||    
T  19651803 aaagagtaatgatatttgaacaaccattttttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtgacataaaaatcaaagtaata 19651902  T
Q  339 gaga 342  Q
    ||||    
T  19651903 gaga 19651906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 405
Target Start/End: Original strand, 50608590 - 50608673
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    ||||||||||||||||||||||||||   || || || || ||||||||||| | ||| |||||||||||||||  ||||||||||    
T  50608590 cacaaaaatcaaagtaatagagagagg--aagtaaaaaaataatgtgagtatgaaagagaaagttgtcaaaaataattgttcaaat 50608673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 346
Target Start/End: Complemental strand, 51577800 - 51577694
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    ||||||| || |||||||| |||| ||| ||||||||||   ||  ||||| |||||||| |||   |||||| | |||||||||||||||||| |||||    
T  51577800 aagagcagtgatatttgaataaccatttcttgtgacaaccttttggacaactaaattatataaagaaatttaggtagtggcacaaaaatcaaagcaatag 51577701  T
Q  340 agagaga 346  Q
    |||||||    
T  51577700 agagaga 51577694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 10994138 - 10994187
Alignment:
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaa 391  Q
    ||||||| |||| ||||| ||||||||||| |||||||||||||||||||    
T  10994138 agagagagaataaaagaataatgtgagtatgagagataaagttgtcaaaa 10994187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 36130318 - 36130384
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||| | |||||||||| |  || ||||||||||||||| |||| ||||||||||||||||    
T  36130318 cacaaaaatcaaggcaatagagagaaa--aagtagaagaacaatgtgtgtatgagagataaagttgtca 36130384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 52205037 - 52204907
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||| ||||| |||||||||||| | ||| || ||| ||||  ||  |||||||||||||| |||   |||||  | ||| |||||||||||||| ||||    
T  52205037 aaagtgcaatattatttgaacaatcttttcttatgataacttgttggacaaccaaattataaaaagaaatttaagtagtgacacaaaaatcaaagcaata 52204938  T
Q  339 gagagagagaaaatagaagaacaatgtgagtat 371  Q
    ||||||||  || ||||| ||||||||||||||    
T  52204937 gagagaga--aagtagaaaaacaatgtgagtat 52204907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 386
Target Start/End: Complemental strand, 54000878 - 54000740
Alignment:
Q  246 aatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagag 345  Q
    |||||||||||||||||  ||||||||||||||   ||  ||||| ||||||||||||   |||||| | |||||||| ||||  ||| |||||||||||    
T  54000878 aatgttatttgaacaactatttattgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcacacaaatttaagcaatagagagag 54000779  T
Q  346 agaaaatagaagaacaatgtgagtataagagataaagttgt 386  Q
    |  || || ||  | ||||||||||| ||||| ||||||||    
T  54000778 a--aagtaaaatgataatgtgagtatgagagagaaagttgt 54000740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 39478542 - 39478474
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||||||||| ||||| ||||| || || || ||| ||||||| ||||| ||||||||||    
T  39478542 cacaaaaatcaaagtaatatagagaaagaaagtaaaaaaataatatgagtatgagagagaaagttgtca 39478474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 53796743 - 53796695
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||| || || || ||||||||||||||||||||||||||||    
T  53796743 agagagagaaagtaaaaaaataatgtgagtataagagataaagttgtca 53796695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 50506572 - 50506470
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||  ||| ||||||||||   ||  ||||| ||||||||||||   |||||| | ||||||| |||||||||| ||||| |    
T  50506572 gagcaatgttatttgaacaactatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac-aaaatcaaagcaataggg 50506474  T
Q  342 agag 345  Q
    ||||    
T  50506473 agag 50506470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 19232096 - 19232183
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa-tggttgttcaaat 405  Q
    ||||||||||||||||| |||||||  ||||||| || ||  | ||||||||||| ||||| || ||||||||||| ||||||| |||||    
T  19232096 tggcacaaaaatcaaagcaatagag--agagaaagtaaaaatataatgtgagtatgagagagaaggttgtcaaaaattggttgtacaaat 19232183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 24310507 - 24310571
Alignment:
Q  342 agagagaaaata-gaagaacaatgtgagtataagagataaagttgt-caaaaatggttgttcaaat 405  Q
    |||||||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  24310507 agagagaaaataagaagaa-aatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaat 24310571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 26732334 - 26732264
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||| ||||  ||||||||||||  ||||| ||  | ||||||||||| ||||||||||||||||    
T  26732334 gtggcacaaaaaccaaaacaatagagagaga--aaataaaaagataatgtgagtatgagagataaagttgtca 26732264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 38376447 - 38376480
Alignment:
Q  311 agatggtggcacaaaaatcaaagtaatagagaga 344  Q
    |||| |||||||||||||||||||||||||||||    
T  38376447 agatagtggcacaaaaatcaaagtaatagagaga 38376480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 46634205 - 46634139
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||||||||||| |||||  || || ||  | ||||||||||| ||||||||||||||||    
T  46634205 cacaaaaatcaaagtaatagaaagaga--aagtaaaaagataatgtgagtatgagagataaagttgtca 46634139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 24509371 - 24509419
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||| || || || ||||||||||| ||||||||||||||||    
T  24509371 agagagagaaagtaaaaaaataatgtgagtatgagagataaagttgtca 24509419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 54036515 - 54036579
Alignment:
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||| ||||  |||| ||| ||||||| |||||||||||||||| ||||||||||| |||||    
T  54036515 agagagagaataagagaataatttgagtatgagagataaagttgtcacaaaatggttgtacaaat 54036579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 29723812 - 29723958
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    ||||||||||||||| |||||| |||||||||||||||  ||  ||||||||||| ||||||   |||||||| |||| ||||||||||||| |||||||    
T  29723812 gagcaatgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggtacaaaaatcaaagcaatagag 29723911  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||||||||||  |  |||||||||| ||||| ||||||||||    
T  29723912 agagagaaaatagaatgatcatgtgagtatgagagagaaagttgtca 29723958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 377
Target Start/End: Complemental strand, 46881086 - 46880953
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    ||||||||||||||||||||||||||||| |||||| |  |||||||||||||||||||||    |||||||| |||||  |||||||||||||||  ||    
T  46881086 gagcaatgttatttgaacaaccctttattatgacaattttttatacaaccaaattatacaacgacatttagatagtggcgaaaaaatcaaagtaat--ag 46880989  T
Q  342 agagagaaaatagaagaacaatgtgagtataagaga 377  Q
    ||||||| | |||||||||||| ||||||| |||||    
T  46880988 agagagatagtagaagaacaatatgagtatgagaga 46880953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 388
Target Start/End: Original strand, 12007072 - 12007217
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    |||||||||||||||| |||||  |||||||||||||||  ||  ||||||||||| ||||||   |||||||| |||||||||||||||||| ||||||    
T  12007072 agagcaatgttatttgtacaactatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggcacaaaaatcaaagcaataga 12007171  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |  ||||||| |||||  |  |||||||||| ||||| ||||||||||    
T  12007172 g--agagaaagtagaatgatcatgtgagtatgagagagaaagttgtca 12007217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 32777594 - 32777738
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||| | ||| |||| | ||||  ||  ||||||||||||||||||   |||||| | ||||||||||||||||||||||   |    
T  32777594 gagcaatgttatttgaacaatcttttcttgtaataacttgttggacaaccaaattatacaaagaaatttaggtagtggcacaaaaatcaaagtaat--gg 32777691  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||| |||||| ||| ||||||||| ||||| ||||||||||    
T  32777692 agagagaaagtagaaggacagtgtgagtatgagagagaaagttgtca 32777738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 405
Target Start/End: Complemental strand, 26749190 - 26749027
Alignment:
Q  240 aagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatag 339  Q
    |||||||||||||||||||||||| ||| |||||||||    ||  ||||| ||||||||||||  ||||||| |  |||||||| |||||||| |||||    
T  26749190 aagagcaatgttatttgaacaaccattttttgtgacaatcttttggacaactaaattatacaaagagatttaggttatggcacaacaatcaaagcaatag 26749091  T
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    ||| |||  || || || || || |||||||| ||||| ||||||||||||||| |||||||||||    
T  26749090 agaaaga--aagtataaaaataaagtgagtatgagagagaaagttgtcaaaaattgttgttcaaat 26749027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 43807700 - 43807844
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    ||||| |||||||||||||||||||| || |||||| |  || |||||||||||||||||||   |||||  | ||| ||||||||||||| ||||  ||    
T  43807700 gagcagtgttatttgaacaaccctttcttatgacaatttgttgtacaaccaaattatacaaagacatttaagtagtgacacaaaaatcaaattaat--ag 43807797  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    | ||||||| || ||||||||||||||||| ||||| ||| ||||||    
T  43807798 aaagagaaagtaaaagaacaatgtgagtatgagagaaaaaattgtca 43807844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 43081774 - 43081921
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||| ||||||||||||||||||  |||  |||||||| |  ||| ||||||| ||||||||||   |||||| | ||| |||||| || |||| ||||    
T  43081774 aaagatcaatgttatttgaacaacatttttatgtgacaatttgttagacaaccacattatacaaagaaatttaggtagtgacacaaatattaaagcaata 43081873  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||  ||||||| ||||||||||||||| |||||||||| ||||||||||    
T  43081874 gag--agagaaagtagaagaacaatgtgtgtataagagagaaagttgtca 43081921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 2008719 - 2008825
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||| |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | |||||||||| ||||||| |||||||    
T  2008719 gagcaatgttatttgaacaaccattttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaatagag 2008818  T
Q  342 agagaga 348  Q
    |||||||    
T  2008819 agagaga 2008825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 34978483 - 34978336
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||| ||||| ||||||| ||| ||||||||||   ||  ||||| ||||||||||||   |||||| | |||||||||||| ||||| ||||    
T  34978483 aaagagcaatgatattttaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcacaaaaaacaaagcaata 34978384  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||  |||||| || ||| | ||||||||||| ||||| ||||||||||    
T  34978383 gaga--gagaaagtaaaaggataatgtgagtatgagagagaaagttgtca 34978336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 363
Target Start/End: Original strand, 15325524 - 15325646
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||||||||||||||||| |||  ||||||||||  ||  ||||||| ||||||||||   |||||||| ||| ||||||||| |||  |||     
T  15325524 aaagagcaatgttatttgaacaacctttttatgtgacaacttgttggacaaccacattatacaaaaaaatttagatagtgacacaaaaataaaaacaat- 15325622  T
Q  339 gagagagagaaaatagaagaacaat 363  Q
     ||||||||||| ||||||||||||    
T  15325623 -agagagagaaagtagaagaacaat 15325646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 33845229 - 33845082
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    ||||||||||||||||||||||||| |||  |||||||| |  ||  ||||||| ||||||||||   |||||| | ||| |||||||||||||| |  |    
T  33845229 aaagagcaatgttatttgaacaaccttttcatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagtgacacaaaaatcaaagca--a 33845132  T
Q  339 gagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
     ||||| | ||| ||||||||||||||| |||| | ||| ||||||||||    
T  33845131 cagagaaaaaaagtagaagaacaatgtgtgtatgaaagagaaagttgtca 33845082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 405
Target Start/End: Original strand, 45419947 - 45420110
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    |||||||| |||||||||||||| ||| || |||||||   ||  ||||| ||||||||||||   |||||| | |||||||||||||||||  ||||||    
T  45419947 agagcaatattatttgaacaaccatttcttttgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcacaaaaatcaaaacaataga 45420046  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtc-aaaaatggttgttcaaat 405  Q
    |  ||||||| || ||  | ||||||| ||| ||||| ||||||||| |||||| |||||||||||    
T  45420047 g--agagaaagtaaaatgataatgtgaatatgagagagaaagttgtcaaaaaatagttgttcaaat 45420110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 27570528 - 27570427
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    ||||||||||||| || |||||  |||||||||||||||  ||  ||||||||||| ||||||   |||| ||| |||||||||||||||||| ||||||    
T  27570528 agagcaatgttatctgtacaactatttattgtgacaacttattggacaaccaaattttacaaagaaattttgatagtggcacaaaaatcaaagcaataga 27570429  T
Q  341 ga 342  Q
    ||    
T  27570428 ga 27570427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 13152777 - 13152632
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaa-gtaataga 340  Q
    |||||||| ||||||||||||| ||| || |||||||   ||  ||||| ||||||||||||   |||||| | ||||||||||||||||| | ||||||    
T  13152777 gagcaatgatatttgaacaaccatttcttatgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcacaaaaatcaaaagcaataga 13152678  T
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||  || || ||| | ||||||||||| ||||| ||||||||||    
T  13152677 gagaga--aagtaaaaggataatgtgagtatgagagagaaagttgtca 13152632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 37352294 - 37352190
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||| ||| ||||  |||||  ||  |||||||||||||||||||  |||||| | ||| |||||||||||||  | |||||    
T  37352294 gagcaatgttatttgaacaaccatttcttgtaccaacttgttggacaaccaaattatacaaataaatttaggtagtgacacaaaaatcaaaacagtagag 37352195  T
Q  342 agaga 346  Q
    |||||    
T  37352194 agaga 37352190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 384
Target Start/End: Original strand, 28249460 - 28249597
Alignment:
Q  245 caatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagaga 344  Q
    ||||||||||||||||||| ||| |||||||||||  ||  ||||| ||||||||||||   |||||  | ||| |||||||||||||| |  | |||||    
T  28249460 caatgttatttgaacaaccatttcttgtgacaactttttggacaactaaattatacaaagaaatttaagtagtgacacaaaaatcaaagca--aaagaga 28249557  T
Q  345 gagaaaatagaagaacaatgtgagtataagagataaagtt 384  Q
    || |||||| || || ||||||| ||| ||||| ||||||    
T  28249558 gataaaataaaataataatgtgaatatgagagaaaaagtt 28249597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 2414163 - 2414112
Alignment:
Q  341 gagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    ||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||    
T  2414163 gagagagaaaataaaagaataatgtgagtatgagatataaagttgtcaaaaa 2414112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 33057566 - 33057459
Alignment:
Q  239 aaagagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaata 338  Q
    |||| |||||||||||||||||| | ||| ||||||||||   ||| |||||||||| |||||||   |||||| |  |  |||||||||||||| ||||    
T  33057566 aaagggcaatgttatttgaacaatcttttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggtaataacacaaaaatcaaagcaata 33057467  T
Q  339 gagagaga 346  Q
    ||||||||    
T  33057466 gagagaga 33057459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 2008839 - 2008889
Alignment:
Q  338 agagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||||| ||||||||||||||| |||| ||||| ||||||||||    
T  2008839 agagagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 2008889  T

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Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 346
Target Start/End: Complemental strand, 3148896 - 3148806
Alignment:
Q  256 gaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagagaga 346  Q
    |||||||| |||  ||||||||||  ||  ||||||| |||||| ||||  |||||||| ||| |||||| ||||||||||||||||||||    
T  3148896 gaacaacctttttatgtgacaacttgttgaacaaccacattatataaataaatttagatagtgacacaaatatcaaagtaatagagagaga 3148806  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 17945155 - 17945107
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||||| || ||||| ||||||||||| ||||||||||||||||    
T  17945155 agagagagaaagtaaaagaataatgtgagtatgagagataaagttgtca 17945107  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 21103193 - 21103052
Alignment:
Q  245 caatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagagaga 344  Q
    ||||| ||||||||||||| ||| |||||| ||||  ||  ||||| || |||||||||   |||||||| |||||| ||||||||||| |||  | |||    
T  21103193 caatgatatttgaacaaccatttcttgtgataacttgttggacaactaacttatacaaagaaatttagatagtggcataaaaatcaaagcaat--aaaga 21103096  T
Q  345 gagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    || ||| || || || ||||| ||||||||| | ||||||||||    
T  21103095 gataaagtaaaaaaataatgtaagtataagatagaaagttgtca 21103052  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 21752743 - 21752693
Alignment:
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    ||||||| ||||  |||| ||||||||||| ||||||||||||||||||||    
T  21752743 agagagagaataagagaataatgtgagtatgagagataaagttgtcaaaaa 21752693  T

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Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 32748411 - 32748476
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||| |||||| || || ||||||||| |||||||||||||||||| |||||||||||| ||||    
T  32748411 agagagaaaaaataaaaaaa-aatgtgagtgtaagagataaagttgtcataaaatggttgttaaaat 32748476  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 41989704 - 41989791
Alignment:
Q  316 gtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    |||||||||||| ||||| |||| |||||||  || || ||  | ||||||||||| ||||| |||||||| ||||||||||||| ||||    
T  41989704 gtggcacaaaaaccaaagcaataaagagaga--aagtaaaaatataatgtgagtatgagagagaaagttgtaaaaaatggttgttaaaat 41989791  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 3062397 - 3062352
Alignment:
Q  361 aatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||    
T  3062397 aatgtgagtataagagagaaagttgtcacaaaatggatgttcaaat 3062352  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 27866542 - 27866587
Alignment:
Q  361 aatgtgagtataagagataaagttgt-caaaaatggttgttcaaat 405  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||||    
T  27866542 aatgtgagtatgagagataaagttgtacaaaaatggttgtacaaat 27866587  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 43942724 - 43942659
Alignment:
Q  340 agagagagaaaatagaagaacaatgtgagtataagagataaagttgtcaaaaatggttgttcaaat 405  Q
    ||||||||||| || ||  | ||||||||||| ||||| |||||||| |||||| |||||||||||    
T  43942724 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtaaaaaatagttgttcaaat 43942659  T

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Target: scaffold0201 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 8656 - 8512
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||  ||| |||||||||||  ||| ||||| |||||||| |||   |||||| ||||| |||||||||||||| |||  ||    
T  8656 gagcaatgttatttgaacaactatttcttgtgacaacttgttagacaactaaattatataaagaaatttagttggtgacacaaaaatcaaagcaat--ag 8559  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    | ||||||| |||||| ||||||||||||| ||||| ||||||||||    
T  8558 aaagagaaagtagaaggacaatgtgagtatgagagagaaagttgtca 8512  T

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Target: scaffold0034 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 388
Target Start/End: Original strand, 101790 - 101937
Alignment:
Q  244 gcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag-- 341  Q
    ||||||||||||| |||||||||| |||||||||||  ||  ||||||||||||||||||   |||||| | ||| || ||||||||||| |||||||      
T  101790 gcaatgttatttgcacaaccctttcttgtgacaacttgttg-acaaccaaattatacaaagaaatttaggtagtgacataaaaatcaaagcaatagagag 101888  T
Q  342 --agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
      |||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  101889 agagagagaaaatagaaggacaatgtgagtatgagagagaaagttgtca 101937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 8840 - 8984
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||||||||||| |||  ||||||||||  ||  ||||||| ||||||||||   |||||| | ||| |||||||||||||| |||  ||    
T  8840 gagcaatgttatttgaacaaccttttcatgtgacaactttttggacaaccacattatacaaagaaatttaggtagtgacacaaaaatcaaagcaat--ag 8937  T
Q  342 agagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||| ||||||||||||||| |||| ||||| ||| ||||||    
T  8938 agagagaaagtagaagaacaatgtgtgtatgagagagaaaattgtca 8984  T

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Target: scaffold0128 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 11119 - 11013
Alignment:
Q  241 agagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaataga 340  Q
    ||||||||||||||||||||||||||| || ||| |||   ||  ||||| ||||||||||||   |||||| | |||||||||||||||||| ||||||    
T  11119 agagcaatgttatttgaacaaccctttcttttgaaaaccttttcgacaactaaattatacaaagaaatttagttagtggcacaaaaatcaaagcaataga 11020  T
Q  341 gagagag 347  Q
    |||||||    
T  11019 gagagag 11013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 24077 - 23991
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca-aaaatggttgttcaaat 405  Q
    |||||||||||||||||| || |||||||||||| ||  |||||||||  |||| |||||||||| ||| |||||||||||||||||    
T  24077 cacaaaaatcaaagtaattgaaagagagaaaataaaaccacaatgtgaacataatagataaagttatcataaaatggttgttcaaat 23991  T

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Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 28279 - 28358
Alignment:
Q  307 atttagatggtggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||| || |||||| |||||||||||||||||||  ||||||| ||||||||||||||| |||| ||||| ||||||||||    
T  28279 atttatatagtggcataaaaatcaaagtaatagag--agagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 28358  T

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Target: scaffold0276 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 1828 - 1724
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||| ||||||||| ||| ||| ||||||   ||  ||||| ||||||||||||   |||||||| |||||||||||||||||| |||| ||    
T  1828 gagcaatgttatgtgaacaaccatttcttgcgacaaccttttggacaactaaattatacaaagaaatttagatagtggcacaaaaatcaaagcaataaag 1729  T
Q  342 agaga 346  Q
    |||||    
T  1728 agaga 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 346
Target Start/End: Original strand, 13444 - 13548
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||| |||||| |||| |||||||||||  ||  ||||| ||||||||||||   ||||||   |||  ||||||||| ||||||||||     
T  13444 gagcaatgttatttaaacaactcttttttgtgacaacttattggacaactaaattatacaaagaaatttaggcagtgatacaaaaatcgaagtaatagaa 13543  T
Q  342 agaga 346  Q
    |||||    
T  13544 agaga 13548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 59400 - 59296
Alignment:
Q  242 gagcaatgttatttgaacaaccctttattgtgacaactacttatacaaccaaattatacaaatggatttagatggtggcacaaaaatcaaagtaatagag 341  Q
    |||||||||||||| |||||| |||| |||||||||||  ||  ||||| ||||||||||||   ||||||   |||  ||||||||| ||||||||||     
T  59400 gagcaatgttatttaaacaactcttttttgtgacaacttattggacaactaaattatacaaagaaatttaggcagtgatacaaaaatcgaagtaatagaa 59301  T
Q  342 agaga 346  Q
    |||||    
T  59300 agaga 59296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 22819 - 22885
Alignment:
Q  320 cacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    |||||||| ||||| |||||| |||||  || || || |||||||||||||||||| ||||||||||||    
T  22819 cacaaaaaccaaagcaatagaaagaga--aattaaaaaaacaatgtgagtataagaaataaagttgtca 22885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 11212 - 11168
Alignment:
Q  362 atgtgagtataagagataaagttg-tcaaaaatggttgttcaaat 405  Q
    |||| ||||||||||||||||||| |||||||||||||| |||||    
T  11212 atgtaagtataagagataaagttgttcaaaaatggttgtacaaat 11168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 12606 - 12537
Alignment:
Q  317 tggcacaaaaatcaaagtaatagagagagagaaaatagaagaacaatgtgagtataagagataaagttgtca 388  Q
    ||||||||| ||||||||||||||||||||  || || ||  | ||| ||||||||||||| ||||||||||    
T  12606 tggcacaaatatcaaagtaatagagagaga--aagtaaaaatataatatgagtataagagagaaagttgtca 12537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 36073 - 36037
Alignment:
Q  356 agaacaatgtgagtataagagataaagttgtcaaaaa 392  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  36073 agaataatgtgagtataagagagaaagttgtcaaaaa 36037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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