View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19349_high_7 (Length: 398)
Name: NF19349_high_7
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 44727951 - 44728319
Alignment:
| Q |
12 |
catcatcacaagagtttgatttactttaaatgaagttaaattgaatagtccgacttgagaggtggataagagacatcaatgcaccatacactcctattag |
111 |
Q |
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| T |
44727951 |
catcatcacaagagtttgatttactttgaatgaagttaaattgaatagtccaacctgagaggtggataagagacatcaatgcaccatacactcctattag |
44728050 |
T |
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| Q |
112 |
cattgggactcttcttctagcttctgctattttgggacctaccagatttatcaccttcttggcatgtatcagaacaaaaattcatcgagattgtacacat |
211 |
Q |
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| T |
44728051 |
cattgggactcttcttctagcttctgctattttgggacctaccagatttatcaccttcttggcatgtaacagaacaaaaattcatcgagattgtacacat |
44728150 |
T |
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| Q |
212 |
cattcgagcttcagttccttgtaaaaagtcacgtattggataccagatataaaggagttaatagcgcagacaaatgttactggttgttgcactcttcgcg |
311 |
Q |
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| T |
44728151 |
cattcgagcttcagttccttgtaaaaagtcacgtattggataccacatataaaggagttaatagcgcagacaaatgttactggttgtcgcactcttcgcg |
44728250 |
T |
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| Q |
312 |
agggaaattgatgtgtgatttcatggcctaaacactaatcaatgtgttaagtgtttatatctaaacact |
380 |
Q |
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| T |
44728251 |
agggaaattgatgtgtgatttcatggcctaaacagtaatcaatgtgttaagtgtttatatctaaacact |
44728319 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 28621158 - 28621221
Alignment:
| Q |
256 |
agatataaaggagttaatagcgcagacaaatgttactggttgttgcactcttcgcgagggaaat |
319 |
Q |
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| T |
28621158 |
agatataaaggagttaatagcgcggacaaatgttattgtttatcacactcttcgtgaaggaaat |
28621221 |
T |
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