View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19349_low_1 (Length: 556)
Name: NF19349_low_1
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 218 - 539
Target Start/End: Complemental strand, 11177534 - 11177213
Alignment:
| Q |
218 |
caacattaaccttatcttcatcactagttgctaatgttatagcacccttgttatcttcatcttcatatttacaacccttgcgttgtttcccccataatgg |
317 |
Q |
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| T |
11177534 |
caacattaaccttatcatcaccactagtagctaatgttatagcacccttgttatcttcatcttcatatttaccacccttgcgttgtttcccccataatgg |
11177435 |
T |
|
| Q |
318 |
accaaagaattcattactattattattgttattcaaactcgaacctgaacccgacgacttcttcggtcttcctctaccacgttgtggcactgcctcaatg |
417 |
Q |
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| T |
11177434 |
accaaagaattcattactattattattattattcaaactcgaacctgaacccgacgccttcttcggtctgcctctaccacgttgcggcactgcctcaatg |
11177335 |
T |
|
| Q |
418 |
tcgcccccattcaaatttctcttcaatcctttgttgccgccactattattattaactaccttcnnnnnnngattatcatcaagcaccatcatatcaaaat |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11177334 |
tcgcccccattcaaatttctcttcaatcctttgttgccgccactattattattaactaccttctttttttgattatcatcaagcaccatcatatcaaaat |
11177235 |
T |
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| Q |
518 |
tttctatcgcaggtctattatc |
539 |
Q |
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|||||||||||||||||||||| |
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| T |
11177234 |
tttctatcgcaggtctattatc |
11177213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 11177790 - 11177580
Alignment:
| Q |
16 |
attaaaacaacaactacaagataaagagagatttctctcgctctcaagattaagaacaacaatacaacatttaaccccaatcctacgttaaacatccctt |
115 |
Q |
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| T |
11177790 |
attaaaacaacaactacaagatcaagagagatttctctcgctctcaagattaagaacaacaatacaacatttaaccccaatcctatgttaaacatccctt |
11177691 |
T |
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| Q |
116 |
cttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttcactggttcctcactctcctcttcccattataat---catcctcata |
212 |
Q |
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| T |
11177690 |
cttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttcactggttcctcactctcctcttcccattataatcatcatcctcata |
11177591 |
T |
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| Q |
213 |
attttcaacat |
223 |
Q |
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||||||||||| |
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| T |
11177590 |
attttcaacat |
11177580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 531
Target Start/End: Complemental strand, 11157576 - 11157473
Alignment:
| Q |
419 |
cgcccccattcaaatttctcttcaatcctttgttgccgccactattattattaactaccttcnnnnnnngattatcatcaagcaccatcatatcaaaatt |
518 |
Q |
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| T |
11157576 |
cgcccccattccagtttctcttcaaacctttgttgctgccaccattattattaaccacctt---------attatcatcaaacaccatcatttcaaaatt |
11157486 |
T |
|
| Q |
519 |
ttctatcgcaggt |
531 |
Q |
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||| ||||||||| |
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| T |
11157485 |
ttcaatcgcaggt |
11157473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 479
Target Start/End: Complemental strand, 11164515 - 11164455
Alignment:
| Q |
419 |
cgcccccattcaaatttctcttcaatcctttgttgccgccactattattattaactacctt |
479 |
Q |
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| T |
11164515 |
cgcccccattcgagtttctcttcaaacctttgctgctgccaccattattattaaccacctt |
11164455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 4703298 - 4703392
Alignment:
| Q |
113 |
cttcttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttcactgg-ttcctcactctcctcttcccattataatcatc |
206 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||| ||||||||||||||||| |||||| |
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| T |
4703298 |
cttcttagaaacatgttagcttcatttcacattaacgattttagtgacctttctttcacgggtttcctcattctcctcttcccattatcatcatc |
4703392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 480
Target Start/End: Original strand, 4703618 - 4703723
Alignment:
| Q |
375 |
cttcttcggtcttcctctaccacgttgtggcactgcctcaatgtcgcc---cccattcaaatttctcttcaatcctttgttgccgccactattattatta |
471 |
Q |
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| T |
4703618 |
cttcttcggtctgcctctaccacgccgcggc---gcctcaatgtctcctcccccatttgagtttctcttcaaacctttgttgcagccaccattattatta |
4703714 |
T |
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| Q |
472 |
actaccttc |
480 |
Q |
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||||||||| |
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| T |
4703715 |
actaccttc |
4703723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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