View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19349_low_10 (Length: 352)
Name: NF19349_low_10
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 137 - 333
Target Start/End: Complemental strand, 2756976 - 2756780
Alignment:
| Q |
137 |
gtaacacaactgcaacatgggtcatggtggaggagaagctgaagaaggaagagatttgcaatttacacctacatgggttgttgctcttgtttgcactgtc |
236 |
Q |
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| T |
2756976 |
gtaacacaactgcaacatgggtcatggtggaggagaagctgaagaaggaagagatttgcaatttacacctacatgggttgttgctcttgtttgcactgtc |
2756877 |
T |
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| Q |
237 |
atcgtcgctgtttcattcgcggtggaacgttctcttcattatcttggcaaggttcttaagaagaaaaatcagaaaccactctttgaagccttacaaa |
333 |
Q |
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| T |
2756876 |
atcgtcgctgtttcattcgcggtggaacgttctcttcattatcttggcaaggttcttaagaagaaaaatcagaaaccactctttgaagccttacaaa |
2756780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 105 - 316
Target Start/End: Complemental strand, 2748944 - 2748732
Alignment:
| Q |
105 |
agtaagttaacgttgttcaaatcaaacattgtgtaacacaactgcaacatgggtcatggtggaggagaagctgaagaaggaagagatttgcaatttacac |
204 |
Q |
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| T |
2748944 |
agtaagttaatattgttcaaatcaaacactgtttaacacagttacaacatgggtcatggtggaggacaagttgaagaaggacccgatttgcaatatgctc |
2748845 |
T |
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| Q |
205 |
ctacatgggttgttgctcttgtttgcactgtcatc-gtcgctgtttcattcgcggtggaacgttctcttcattatcttggcaaggttcttaagaagaaaa |
303 |
Q |
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| T |
2748844 |
ctacatggattgttgcccttgtttgcagcgtcatcggtcgcagtttcattcgccgctgaatgttctcttcattgtcttggcaactttcttaagaagaaaa |
2748745 |
T |
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| Q |
304 |
atcagaaaccact |
316 |
Q |
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| T |
2748744 |
accaaaaaccact |
2748732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 2757055 - 2756974
Alignment:
| Q |
19 |
acattagaacaagaaatagtgcagtagttgttgttttttatgtcccatgtcacagttgtaacataaaacacaacaaagagta |
100 |
Q |
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| T |
2757055 |
acattagaacaagaaatagtgcagtagttgttgttttttatgtcccatgttgcagttgtaacataaaacacaacaaagagta |
2756974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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