View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19349_low_11 (Length: 349)
Name: NF19349_low_11
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 45514788 - 45515112
Alignment:
| Q |
8 |
catcatcatggacagcaaacaccttcccttcattgcaaattcttatattgcgacaaaatatgtttagcgctagtattccttcacaactatgtcaactcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514788 |
catcatcatggacagcaaacaccttcccttcattgcaaattcttatattgcgacaaaatatgtttagcgctagtattccttcacaactatgtcaactcaa |
45514887 |
T |
|
| Q |
108 |
atcactccaaattctggacctctctagaaacaaattgcaaggttcaatacctcgatgcataggaaaccttgaaggaatgacattgggaaaatcaacatca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514888 |
atcactccaaattctggacctctctagaaacaaattgcaaggttcaatacctcgatgcataggaaaccttgaaggaatgacattgggaaaatcaacatca |
45514987 |
T |
|
| Q |
208 |
tcatcagttcatatgcagtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttcttacagatgtcaatgcattacctcctagtactc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514988 |
tcatcagttcatatgcagtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttcttacagatgtcaatgcattacctcctagtactc |
45515087 |
T |
|
| Q |
308 |
cggttgattggcctagtcaatttgt |
332 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45515088 |
cggttgattggcctagtcaatttgt |
45515112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University