View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19349_low_14 (Length: 335)

Name: NF19349_low_14
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19349_low_14
NF19349_low_14
[»] chr3 (2 HSPs)
chr3 (25-254)||(33721193-33721422)
chr3 (261-317)||(33721041-33721097)
[»] chr5 (2 HSPs)
chr5 (25-254)||(28698405-28698635)
chr5 (261-317)||(28698253-28698309)
[»] chr7 (3 HSPs)
chr7 (25-254)||(626952-627184)
chr7 (25-80)||(29868428-29868483)
chr7 (261-314)||(627280-627333)
[»] chr8 (2 HSPs)
chr8 (25-80)||(19965894-19965949)
chr8 (25-80)||(21027047-21027102)
[»] chr1 (2 HSPs)
chr1 (25-80)||(20785866-20785921)
chr1 (25-80)||(29470140-29470195)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 254
Target Start/End: Complemental strand, 33721422 - 33721193
Alignment:
Q  25 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33721422 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagca 33721323  T
Q  125 atacaagtctcttttcaccctgtccatactgcnnnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtca 224  Q
    ||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||    
T  33721322 atacaagtctcttttcaccctgtccatactgcaaaaaaaataaccatccacaaaacagatattggtggagaccaaacgtaaaatgtcagaagtgttgtca 33721223  T
Q  225 gttaggacatgtggaaagaatatgcaaggc 254  Q
    ||||||||||||||||||||||||||||||    
T  33721222 gttaggacatgtggaaagaatatgcaaggc 33721193  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 33721097 - 33721041
Alignment:
Q  261 gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctcttta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33721097 gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctcttta 33721041  T

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Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 25 - 254
Target Start/End: Complemental strand, 28698635 - 28698405
Alignment:
Q  25 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagca 124  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28698635 agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagcagca 28698536  T
Q  125 atacaagtctcttttcaccctgtccatactgc-nnnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtc 223  Q
    ||||||||||||||||||| ||||||| ||||         |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  28698535 atacaagtctcttttcaccttgtccattctgcaaaaaaaaataaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtggtc 28698436  T
Q  224 agttaggacatgtggaaagaatatgcaaggc 254  Q
    |||||||||||||||||||||||||||||||    
T  28698435 agttaggacatgtggaaagaatatgcaaggc 28698405  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 28698309 - 28698253
Alignment:
Q  261 gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctcttta 317  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  28698309 gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctcttta 28698253  T

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Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 626952 - 627184
Alignment:
Q  25 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagca 124  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  626952 agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagcagca 627051  T
Q  125 atacaagtctcttttcaccctgtccatactgc---nnnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtgg 221  Q
    ||| ||||||||||||||||| ||||||||||           |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  627052 atataagtctcttttcaccctatccatactgcaaaaaaaaaaataaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtgg 627151  T
Q  222 tcagttaggacatgtggaaagaatatgcaaggc 254  Q
     ||||||||||||||||||||||||||||||||    
T  627152 ccagttaggacatgtggaaagaatatgcaaggc 627184  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 29868428 - 29868483
Alignment:
Q  25 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa 80  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  29868428 agaagaatgataaggtctgaaggatcagtggaaggagcattacaagctaaattaaa 29868483  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 627280 - 627333
Alignment:
Q  261 gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctct 314  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  627280 gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctct 627333  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 19965894 - 19965949
Alignment:
Q  25 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19965894 agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa 19965949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 21027102 - 21027047
Alignment:
Q  25 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21027102 agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa 21027047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 20785921 - 20785866
Alignment:
Q  25 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20785921 agaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa 20785866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 29470140 - 29470195
Alignment:
Q  25 agaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa 80  Q
    ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  29470140 agaagaacgataaggtctgaaggttcagtggaaggagcattgcaagctaaattaaa 29470195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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