View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19349_low_15 (Length: 332)
Name: NF19349_low_15
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 11804966 - 11805193
Alignment:
| Q |
1 |
caggatgaccagatgagaaatctttaacaaaggtcaacatatttccaataagcggccatcccaaatgaccaggaggcagagggtgctgtttctttcttag |
100 |
Q |
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||||||||||||||||||||||||||||||| | ||||| || ||||| || ||||||||||||||||||||||| ||||||| ||||| ||| | || |
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| T |
11804966 |
caggatgaccagatgagaaatctttaacaaaagctaacatgttgccaatgagaggccatcccaaatgaccaggaggtagagggtattgtttttttttgag |
11805065 |
T |
|
| Q |
101 |
tttcatattatagtaccactcattcaatctccacacaaaaatgttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtgttgtatt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||| |||| || ||| ||||||||||||||| || ||||||||||||||||||||||| | || |||| |
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| T |
11805066 |
tttcatattataataccactcattcaatctccacataaaattgatcaaacaaaaatagcttgccaacaaaatggcacacatccaaacccaatattctatt |
11805165 |
T |
|
| Q |
201 |
ttcatctttgaataattgaatctatcta |
228 |
Q |
| |
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| |||||||||||||||| || |||||| |
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| T |
11805166 |
tccatctttgaataattggatatatcta |
11805193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 11820381 - 11820595
Alignment:
| Q |
1 |
caggatgaccagatgagaaatctttaacaaaggtcaacatatttccaataagcggccatcccaaatgaccaggaggcagagggtgctgtttctttcttag |
100 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||| | ||| || ||||||||||| |
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| T |
11820381 |
caggatggcctgatgagaaatctttaacaaaggtcaacatattgccaataaatggccatcccatatgaccagatggcaaaaggtattgattctttcttag |
11820480 |
T |
|
| Q |
101 |
tttcatattatag-taccactcattcaatctccacacaaaaatgttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtgttgtat |
199 |
Q |
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||||| ||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| || |||||||||||||||| |||||| |||||| |
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| T |
11820481 |
tttcaaattatagttaccactcattcaacctccacacaaaaatattaacacaaaaatagcttgccaacaaaatggcacacatccgaacccaaaattgtat |
11820580 |
T |
|
| Q |
200 |
tttcatctttgaata |
214 |
Q |
| |
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| |||||||||||| |
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| T |
11820581 |
atccatctttgaata |
11820595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11818957 - 11819061
Alignment:
| Q |
1 |
caggatgaccagatgagaaatctttaacaaaggtcaacatatttccaataagcggccatcccaaatgaccaggaggcagagggtgctgtttctttcttag |
100 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11818957 |
caggatggcctgatgagaaatctttaacaaaggtcaacatatttccaataagtggccatcccaaatgaccaggaggcagagggtactgtttctttcttag |
11819056 |
T |
|
| Q |
101 |
tttca |
105 |
Q |
| |
|
||||| |
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|
| T |
11819057 |
tttca |
11819061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 11819058 - 11819167
Alignment:
| Q |
144 |
ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtgttgtattttcatctttgaataattga----atctatctatctagttcatt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
11819058 |
ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtattgtatttccatctttgaataattgaatatatctatctatctagttcatt |
11819157 |
T |
|
| Q |
240 |
tgcttattat |
249 |
Q |
| |
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|||||||||| |
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|
| T |
11819158 |
tgcttattat |
11819167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 11805250 - 11805316
Alignment:
| Q |
250 |
tatatctagttcatttgcttgttgcatttatctccccctagatgttgtgtcagagttggtgaggatg |
316 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11805250 |
tatatctagttcatttgcgagttgcatttatctccccctagatcttgtgtcagagttggtgaggatg |
11805316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 11819219 - 11819265
Alignment:
| Q |
270 |
gttgcatttatctccccctagatgttgtgtcagagttggtgaggatg |
316 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
11819219 |
gttgcatttatcttcccctagattttgtgtcagagttggtgaggatg |
11819265 |
T |
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