View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19349_low_19 (Length: 302)
Name: NF19349_low_19
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_19 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0144 (2 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 16986422 - 16986693
Alignment:
| Q |
20 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16986422 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactc |
16986521 |
T |
|
| Q |
120 |
cctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagat-aa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |
|
|
| T |
16986522 |
cctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgtaaattgtttgggaaaactagataaa |
16986621 |
T |
|
| Q |
219 |
aaaacacaatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgatg |
290 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16986622 |
aaaacacaatcttcaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgatg |
16986693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 16796131 - 16796401
Alignment:
| Q |
20 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactc |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| || || || |||||| |
|
|
| T |
16796131 |
atagcctgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttttgaatcaactatgaaattggtcaatgtttgcagactagataactc |
16796230 |
T |
|
| Q |
120 |
cctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagataaa |
219 |
Q |
| |
|
|| ||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| |
|
|
| T |
16796231 |
cccaattctaaaaggagttgatttcaatgatggacaatctttaattatgagatgtcgaaggtcctgcaattttttgaattgtttgggaaaactagagaaa |
16796330 |
T |
|
| Q |
220 |
aaaca-caatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgat |
289 |
Q |
| |
|
||| | |||| | ||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
16796331 |
aaatagcaatgttcaagtttaagtgtttgcaatttctgcagtctacaaacagacgcaggcaaggttgtgat |
16796401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 16656980 - 16657250
Alignment:
| Q |
20 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | || ||||||||| |
|
|
| T |
16656980 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaatagttcaatgtttggagactagttaactc |
16657079 |
T |
|
| Q |
120 |
cctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagataaa |
219 |
Q |
| |
|
|| |||| |||||||||||||| ||||||| || ||| |||||| ||||||||||||||||||| |||||||| |||||||| |||||| |||||||| |
|
|
| T |
16657080 |
cccaattttaaaaggagttgatttcaatgatggacaacttttaataatgagatgtcgaaggtcctgcaattttgtgaattgttttggaaaactagataaa |
16657179 |
T |
|
| Q |
220 |
aaa-cacaatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgat |
289 |
Q |
| |
|
||| |||| || |||||| |||||||| ||||| || ||| |||||| ||| ||||||| |||||||| |
|
|
| T |
16657180 |
aaataacaacttagaagtttaagtgtttgcaatttttgaagtttacaaaaagacgcaggcaaggttgtgat |
16657250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 17068472 - 17068742
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactcc |
120 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| | ||||||| | || ||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
17068472 |
tagcttgcctcctaattgtaagttttgtagctctgctaaaccataaccagtttttgaatcaactatgaaattggtcaatgttttcagactagttaactcc |
17068571 |
T |
|
| Q |
121 |
ctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagataaaa |
220 |
Q |
| |
|
| ||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |||| ||| |
|
|
| T |
17068572 |
ccaattctaaaaggacttgatttcaatgattgacaatctttaatcatgagatgtcgaaggtcctgcaatttgttgaattgttcgggaaaactagagaaat |
17068671 |
T |
|
| Q |
221 |
aaca-caatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgatg |
290 |
Q |
| |
|
|| | |||| | ||||||| |||||||| | ||| |||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
17068672 |
aagagcaatattcaagtttaagtgtttgcagtttatgcagtttacaaacagacgcaggcaaggttgtgatg |
17068742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 16869184 - 16868982
Alignment:
| Q |
20 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactc |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| || || ||||||||| |
|
|
| T |
16869184 |
atagcttgcctcctaattgtaacttgtgtagctctgctaaaccaaacccagtttttgaaccaaccatgaaattggtcaatgtttgcagactagttaactc |
16869085 |
T |
|
| Q |
120 |
cctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagataaa |
219 |
Q |
| |
|
| |||||| |||||||||||| ||||||| || ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| |
|
|
| T |
16869084 |
tccaattctgaaaggagttgatttcaatgatggacaatcttcaatcatgagatgtcgaaggtcctgcaattttttgaattgtttgggaaaactagagaaa |
16868985 |
T |
|
| Q |
220 |
aaa |
222 |
Q |
| |
|
||| |
|
|
| T |
16868984 |
aaa |
16868982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 16780143 - 16780404
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactcc |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||| |||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
16780143 |
tagcttgcctcctaattgcaagttgtgtagctctgctaaaccaaacccattttttgaaccaacaatgaaagtagtcaatgttttcagacaagttaactcc |
16780242 |
T |
|
| Q |
121 |
ctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagata-aa |
219 |
Q |
| |
|
| ||||||||||||||||||| ||||| | ||||| | |||| | ||||||| |||||| | ||||| || |||||||| |||||| |||| | | |
|
|
| T |
16780243 |
ccaattctaaaaggagttgatgtcaatctctggcaagcaataataacaagatgtctaaggtcatgcaattgtgtcaattgtttcggaaaactagaaagat |
16780342 |
T |
|
| Q |
220 |
aaacacaatctacaagttttagtgtttgtaatttct-gcagtctacaaacagaaccaggcaa |
280 |
Q |
| |
|
|| ||||| || ||||||| |||||||| ||||||| ||| |||||||||||| ||||||| |
|
|
| T |
16780343 |
aatcacaaccttcaagtttaagtgtttgcaatttctggcaatctacaaacagacgcaggcaa |
16780404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 274
Target Start/End: Original strand, 16786943 - 16787190
Alignment:
| Q |
28 |
cctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactccctaattc |
127 |
Q |
| |
|
|||||||||| || |||| |||||| ||||||||| | ||||||| | || |||| |||||| ||| | ||||||||| |||||| |||| || |||| |
|
|
| T |
16786943 |
cctcctaattataggttgcatagctcggctaaaccataaccagtttttgaatcaacaatgaaaatggaccatgttttcagacaagtgaacttcccaattt |
16787042 |
T |
|
| Q |
128 |
taaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagata-aaaaacaca |
226 |
Q |
| |
|
||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |||||| | |||| |||| ||| |
|
|
| T |
16787043 |
taaaaggagatgacatcaatgaatggcaatttttaatcatgagatgtcgaaggtccttcaattctatcaattgtttaggaaaactggatagaaaatgaca |
16787142 |
T |
|
| Q |
227 |
atctacaagttttagtgtttgtaatttctgcagtctacaaacagaacc |
274 |
Q |
| |
|
| | |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16787143 |
acgttcaagttttagtgtttgcaatttctgcagtctacaaacagaacc |
16787190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 16842776 - 16842885
Alignment:
| Q |
25 |
ttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactccctaa |
124 |
Q |
| |
|
||||||| || || |||||| ||||||||||||||||||||||||| ||| ||| || |||||| || |||||||| ||| | ||||||| ||| || |
|
|
| T |
16842776 |
ttgcctcttagttctaagttatgtagctctgctaaaccaaacccagcctctgaacgtacaatgaaaatgctcaatgttctcagatgagttaaccccccaa |
16842875 |
T |
|
| Q |
125 |
ttctaaaagg |
134 |
Q |
| |
|
|| ||||||| |
|
|
| T |
16842876 |
ttttaaaagg |
16842885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 18807394 - 18807348
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacc |
67 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
18807394 |
tagcttgcctcctagttgtaagtcatgtaactctgctaaaccaaacc |
18807348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 11821 - 12081
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactcc |
120 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
11821 |
tagctttcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttttgaaccaacaatgaaaatggtcaatgttttcagacaagttaactcc |
11920 |
T |
|
| Q |
121 |
ctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagata-aa |
219 |
Q |
| |
|
| |||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | |
|
|
| T |
11921 |
ccaattttaaaaggagttgatttcaatgaactgcaatttttaatcatgagatgtcgaaggtccttcaattttgtaaattgtttgggaaaatcagatagat |
12020 |
T |
|
| Q |
220 |
aaacacaatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaa |
280 |
Q |
| |
|
| ||| | | |||||||||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
12021 |
gatgacatttttcaagttttagtgtttgcaatttctgtagtctgcaaacagaaccaggcaa |
12081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 7449 - 7719
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactcc |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| ||||||||| | ||||||| |||||| | ||||||||||||| | |||||||| | |
|
|
| T |
7449 |
tagcttgcctcctaactgtaagttgtgtagctgtgctaaaccatacccagtttttgaaccaacaatgaaaatcgtcaatgttttcaggctagttaactgc |
7548 |
T |
|
| Q |
121 |
ctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagata-aa |
219 |
Q |
| |
|
| |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |
|
|
| T |
7549 |
ccaattctaaaaggagctgatatcaatgaatggcaatttttaatcatgagatgtcgaaggtccttcaattttgtaaattgtttgggaaaactagatagca |
7648 |
T |
|
| Q |
220 |
aaacacaatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgatg |
290 |
Q |
| |
|
|| ||| | |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
7649 |
aatggcaacgttcaagttttagtgtttgcaatttctgcagtctacaaacagacccaggcaaggttgtgatg |
7719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 17021 - 17272
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactcc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
17021 |
tagcttgcctcctaattgtaagttgtgtagctctactaaaccaaacccagtttttgaaccaacaatgaaagtggtcaatgttttcagacaagttaactcc |
17120 |
T |
|
| Q |
121 |
ctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagata-aa |
219 |
Q |
| |
|
| |||||| |||||||| ||| ||||| | ||||| | |||| | ||||||| |||||| | ||||| || |||||||| |||||| |||| | || |
|
|
| T |
17121 |
ccaattctgaaaggagtagatgtcaatctccggcaagcaataataacaagatgtctaaggtcatgcaattgtgtcaattgtttcggaaaactagaaagaa |
17220 |
T |
|
| Q |
220 |
aaacacaatctacaagttttagtgtttgtaatttctgcagtctacaaacaga |
271 |
Q |
| |
|
| ||||| || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
17221 |
tatcacaaccttcaagtttaagtgtttgcaatttctgcagtctacaaacaga |
17272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 35032 - 35234
Alignment:
| Q |
20 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35032 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaactcagtttctgaaccaactatgaaattggtcaatgttttcaaacaagttaactc |
35131 |
T |
|
| Q |
120 |
cctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagataaa |
219 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||| || |||||| | ||||||||||||||| |||||||| |
|
|
| T |
35132 |
cccaattctaaaaggagttgatagcaatgacggacaagttttaatcacgagatgtcgaaggttctgcaatttggtgaattgtttgggaaaactagataaa |
35231 |
T |
|
| Q |
220 |
aaa |
222 |
Q |
| |
|
||| |
|
|
| T |
35232 |
aaa |
35234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 289
Target Start/End: Original strand, 36462 - 36728
Alignment:
| Q |
24 |
cttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactcccta |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||| ||| | || |||||||||||||||||||||||| | || ||||||||||| | |
|
|
| T |
36462 |
cttgcctcctaattgtaagttgtgtagctctgctaaacgaaaaccaatttttgaatcaactatgaaattggtcaatgtttggagactagttaactcccca |
36561 |
T |
|
| Q |
124 |
attctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagataaaaaac |
223 |
Q |
| |
|
||| |||||||||||||| ||||||| || ||||||| ||| ||||||||||||||||||| |||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
36562 |
attttaaaaggagttgatttcaatgatggacaatcttcaataatgagatgtcgaaggtcctgcaattttgtgaatgttttgggaaaactagataaaaaac |
36661 |
T |
|
| Q |
224 |
-acaatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgat |
289 |
Q |
| |
|
|||| || |||||| |||||||| ||||| || ||| |||||||||| ||||||| |||||||| |
|
|
| T |
36662 |
aacaacctcgaagtttaagtgtttgcaatttttgtagtttacaaacagacgcaggcaaggttgtgat |
36728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 38940548 - 38940279
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactcc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
38940548 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaaaccagtttttgaaccaacaatgaaaatggtcaattttttcaaacaagttaactcc |
38940449 |
T |
|
| Q |
121 |
ctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagata-aa |
219 |
Q |
| |
|
| ||||||||||||||||||| ||||||| | |||| |||||||||||||||| |||||| || || ||||| ||||||||||||||| |||| | | |
|
|
| T |
38940448 |
ccaattctaaaaggagttgatttcaatgatcgacaatttttaatcatgagatgttgaaggttctgcagttttgtcaattgtttgggaaaactagaaagat |
38940349 |
T |
|
| Q |
220 |
aaacacaatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgat |
289 |
Q |
| |
|
|| |||| || |||||||||||||||| |||||| |||| ||||||||||| ||||||| |||||||| |
|
|
| T |
38940348 |
aattacaaccttcaagttttagtgtttgcaatttcagcagcctacaaacagacacaggcaaggttgtgat |
38940279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 26 - 289
Target Start/End: Complemental strand, 7054456 - 7054192
Alignment:
| Q |
26 |
tgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactccctaat |
125 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| |||||| |||||||||||||| |||||||||||||| ||| |
|
|
| T |
7054456 |
tgcctcctaattgtaagttgtgtaactctgctaaaccaaacccagtttttgatccaacaatgaaaacggtcaatgttttcagacaagttaactccccaat |
7054357 |
T |
|
| Q |
126 |
tctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagataaa-aaaca |
224 |
Q |
| |
|
|||||| |||||||||| ||||| |||| || ||||| || ||||| ||| || | ||||| | ||||||||||| ||| ||| ||| || |
|
|
| T |
7054356 |
tctaaagggagttgatactaatgaaaaacaattttcaatcacgatatgtctaagttcttgcaattgcgtcaattgtttggggaaatgagaaaaataaggg |
7054257 |
T |
|
| Q |
225 |
caatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgat |
289 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
7054256 |
cagtctttaagttttagtgtttgcaacttctgcagtctacaaacagacccaggcaaggttgtgat |
7054192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 21 - 289
Target Start/End: Original strand, 8126 - 8395
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactcc |
120 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
8126 |
tagcttgcctcctaattgtaagttttgtagctctgctaaaccatacccagtttttgaaccaacaatgaaaatggtcaattttttcaaacaagttaactcc |
8225 |
T |
|
| Q |
121 |
ctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagata-aa |
219 |
Q |
| |
|
| ||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||| | ||||| |||||||| |||||| |||| | | |
|
|
| T |
8226 |
ccaattctaaaaggagttgatttcaatgatatgcaatttttaatcatgagatgttgaaggtcctgtagttttgtcaattgttttggaaaactagaaagat |
8325 |
T |
|
| Q |
220 |
aaacacaatctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgat |
289 |
Q |
| |
|
|| ||||| | ||||||| |||||||| |||||||||||| |||||||||| | ||||| |||||||| |
|
|
| T |
8326 |
gaagacaatattcaagtttaagtgtttgcaatttctgcagtttacaaacagacgcgggcaaggttgtgat |
8395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 20153410 - 20153659
Alignment:
| Q |
20 |
atagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactc |
119 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||| |||||||| ||| ||||| | ||||||| |||||| ||||||||||||||| |||||||||||| |
|
|
| T |
20153410 |
atagctttcctcctaattgtaacttgtttagctcttctaaaccatacc-agtttttgaaccaacaatgaaagtggtcaatgttttcagacaagttaactc |
20153508 |
T |
|
| Q |
120 |
cctaattctaaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagataaa |
219 |
Q |
| |
|
|| |||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||| |||||| | ||||||||||| ||| || |||| |
|
|
| T |
20153509 |
cccaattctaaaaggagttaatatgaatgataggcaatttttaatcatgagatgtcgaaggtcctgcaatttcgtcaattgtttggggaaactacgtaaa |
20153608 |
T |
|
| Q |
220 |
aaa-cacaatctacaagttttagtgtttgtaatttctgcagtctacaaaca |
269 |
Q |
| |
|
||| ||||| | |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
20153609 |
aaataacaattttcaagttttagtgtttgcaacttctgcagtctacaaaca |
20153659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 28 - 289
Target Start/End: Original strand, 13377065 - 13377327
Alignment:
| Q |
28 |
cctcctaattgtaagttgtgtagctctgctaaaccaaacccagtttctaaaccaactatgaaattggtcaatgttttcaaacaagttaactccctaattc |
127 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||| |||| | ||||| |||||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
13377065 |
cctcctaattgtaagttttgcagctcagctaaaccaaacccaatttccgagccaacaatgaaaatggtcaatgttttcagacaagttaactccctgattc |
13377164 |
T |
|
| Q |
128 |
taaaaggagttgatatcaatgacgggcaatctttaatcatgagatgtcgaaggtccttcaattttgaaaattgtttgggaaaagtagata-aaaaacaca |
226 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||||||||||| || ||||||| |||||| | ||||| || ||||| ||| |||||| |||| | | || |||| |
|
|
| T |
13377165 |
taaatggacttgataccaatgactggcaatctttaataataagatgtctaaggtcttccaattgtgtaaatttttttggaaaactagaaagagaatcaca |
13377264 |
T |
|
| Q |
227 |
atctacaagttttagtgtttgtaatttctgcagtctacaaacagaaccaggcaaagttgtgat |
289 |
Q |
| |
|
| | ||||||||| ||||| ||||||||||| || |||||||| ||||||| |||||||| |
|
|
| T |
13377265 |
acgttcaagttttaaggtttgcaatttctgcagcctgcaaacagactcaggcaaggttgtgat |
13377327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 8313 - 8360
Alignment:
| Q |
21 |
tagcttgcctcctaattgtaagttgtgtagctctgctaaaccaaaccc |
68 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
8313 |
tagcttgcctcctagttgtaagtcatgtaactctgctaaaccaaaccc |
8360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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