View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19349_low_24 (Length: 248)
Name: NF19349_low_24
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 11818692 - 11818452
Alignment:
| Q |
1 |
aatctaccaaagaagtgatgagatgtaaaccagtttggagtttctctcgaaaagaacacatgcgttttagacgcttaatctcttctcttaccatgggcca |
100 |
Q |
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| T |
11818692 |
aatctaccaaagaagtgatgagatgtaaaccagtttggagtttctctcgaaaagaacacatgcgttttagacgcttaatctcttctcttaccatgggcca |
11818593 |
T |
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| Q |
101 |
taatacattagaaatgtacataccacgtattgaagacattgtgatcaattctttggaggaactttctagcatgagtcactcaattgaatttttgaaggaa |
200 |
Q |
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| T |
11818592 |
taatacattagaaatgtacataccacgtattgaagacattgtgatcaattctttggaggaactttctagcatgagtcactcaattgaatttttgaaggaa |
11818493 |
T |
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| Q |
201 |
atgaaaaatatttcctttaatatcatcattgatatattctt |
241 |
Q |
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| T |
11818492 |
atgaaaaatatttcctttaatatcatcattgatattttctt |
11818452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 11804615 - 11804476
Alignment:
| Q |
87 |
cttaccatgggccataatacattagaaatgtacataccacgtattgaagacattgtgatcaattctttggaggaactttctagcatgagtcactcaattg |
186 |
Q |
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| T |
11804615 |
cttaccatgggtcacaatacattagaaatgtacctaccacgtattgaggacattgtaatcaattctatggaggaaatttctagtatgaatcacccagtgg |
11804516 |
T |
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| Q |
187 |
aatttttgaaggaaatgaaaaatatttcctttaatatcat |
226 |
Q |
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| T |
11804515 |
agtttttgaaagagatgaagagcatttcctttgatatcat |
11804476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 20573455 - 20573547
Alignment:
| Q |
87 |
cttaccatgggccataatacattagaaatgtacataccacgtattgaagacattgtgatcaattctttggaggaactttctagcatgagtcac |
179 |
Q |
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| T |
20573455 |
cttaccatgggtcacaatacattagaaatgtacctaccacgtattgaggacattgtgatcaattctttggagaaaatttctagtatgaatcac |
20573547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 218
Target Start/End: Complemental strand, 11826949 - 11826783
Alignment:
| Q |
52 |
aagaacacatgcgttttagacgcttaatctcttctcttaccatgggccataatacattagaaatgtacataccacgtattgaagacattgtgatcaattc |
151 |
Q |
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| T |
11826949 |
aagaacacaagcgtgtgaaacgcttaatctcagttcttaccatgggccacaatactttagaaatgtacctaacttgtatggaggacattgtgataaattc |
11826850 |
T |
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| Q |
152 |
tttggaggaactttctagcatgagtcactcaattgaatttttgaaggaaatgaaaaatatttccttt |
218 |
Q |
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| T |
11826849 |
tttggaggaaatttctagtatgaatcaccaagtggagtttttgaaagagatgaagaatatttccttt |
11826783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 17513611 - 17513519
Alignment:
| Q |
87 |
cttaccatgggccataatacattagaaatgtacataccacgtattgaagacattgtgatcaattctttggaggaactttctagcatgagtcac |
179 |
Q |
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| T |
17513611 |
cttaccatgggtcacaatacattagaaatgtacctaccacgtattgaggacattgtgatcaattctttggagaaaatttctagtatgaatcac |
17513519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 17539603 - 17539695
Alignment:
| Q |
87 |
cttaccatgggccataatacattagaaatgtacataccacgtattgaagacattgtgatcaattctttggaggaactttctagcatgagtcac |
179 |
Q |
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| T |
17539603 |
cttaccatgggtcacaatacattagaaatgtacctaccacgtattgaggacattgtgatcaattctttggagaaaatttctagtatgaatcac |
17539695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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