View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19349_low_4 (Length: 450)
Name: NF19349_low_4
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_4 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 20 - 450
Target Start/End: Complemental strand, 11807701 - 11807271
Alignment:
| Q |
20 |
actagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcatataggctctattgggaggtggtattttccttcttacaatgca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11807701 |
actagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcatataggctctattgggaggtggtattttccttcttacaatgca |
11807602 |
T |
|
| Q |
120 |
aacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaattataatacaatacatttggatcatgtaagtgaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11807601 |
aacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaattataatacaatacatttggatcatgtaagtgaga |
11807502 |
T |
|
| Q |
220 |
attgggcaaaggatatagatcaaatggacttgattatgttgtcatttggtcattggtttttggacattccttcagtttactatgagaatgattcagttat |
319 |
Q |
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| T |
11807501 |
attgggcaaaggatatagatcaaatggacttgattatgttgtcatttggtcattggtttttggacattccttcagtttactatgagaatgattcagttat |
11807402 |
T |
|
| Q |
320 |
aggttgttctatatgtcatgatttaaaatcaaaatataatgatattggattttatgatccaatgagaaaggctttaaggattgcccttaatgccataatt |
419 |
Q |
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| T |
11807401 |
aggttgttctatatgtcatgatttaaaatcgaaatataatgatattggattttatgttccaatgagaaaggctttaaggattgcccttaataccataatt |
11807302 |
T |
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| Q |
420 |
gagaagaaaatggttaaagggaatgaaattg |
450 |
Q |
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| T |
11807301 |
gagaggaaaatggttaaagggaatgaaattg |
11807271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 95 - 450
Target Start/End: Original strand, 15283852 - 15284207
Alignment:
| Q |
95 |
gtggtattttccttcttacaatgcaaacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaattataataca |
194 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| || |||||| | ||||||||| |
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| T |
15283852 |
gtggtattttccttctcacaatgcaaacttgacattctattggtcaccatttcttgtgaagggtgatcaaagaaaaaatgatgggccacaatataataca |
15283951 |
T |
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| Q |
195 |
atacatttggatcatgtaagtgagaattgggcaaaggatatagatcaaatggacttgattatgttgtcatttggtcattggtttttggacattccttcag |
294 |
Q |
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| T |
15283952 |
atatatttggatcatgtaaatgaaatgtgggcaagggatatggataaaatggacttgattgttttgtcatttggtcattggtttttggacattccttcaa |
15284051 |
T |
|
| Q |
295 |
tttactatgagaatgattcagttataggttgttctatatgtcatgatttaaaatcaaaatataatgatattggattttatgatccaatgagaaaggcttt |
394 |
Q |
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| T |
15284052 |
tttactatgaaggtgattcagttataggttgttttagatgtcaagaatttaaatttaattatagtgatattggattttatattccaatgagaaaggcttt |
15284151 |
T |
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| Q |
395 |
aaggattgcccttaatgccataattgagaagaaaatggttaaagggaatgaaattg |
450 |
Q |
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| T |
15284152 |
aaggactacccttaatagcataattgagaggaaaatggttaaagggaataaaattg |
15284207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 309
Target Start/End: Original strand, 15262397 - 15262574
Alignment:
| Q |
132 |
tattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaattataatacaatacatttggatcatgtaagtgagaattgggcaaagg |
231 |
Q |
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|||||| | |||||||||||| | |||||| ||||| ||| |||||||||| ||||||||||||| |||||| ||| | || || | ||| |||| |
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| T |
15262397 |
tattggtcgccatttcttgtgcaaggtgatgaaagatcaaaatccgggccaaattttaatacaatacatctggatcgtgttaacgaaaaattggcgaagg |
15262496 |
T |
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| Q |
232 |
atatagatcaaatggacttgattatgttgtcatttggtcattggtttttggacattccttcagtttactatgagaatg |
309 |
Q |
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| T |
15262497 |
atatggatggaatcgacttgattgtgttatcatttggaaattggtttattaatgttccttcagtttattatgagaatg |
15262574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 317
Target Start/End: Complemental strand, 15287968 - 15287838
Alignment:
| Q |
184 |
attataatacaatacatttggatcatgtaagtgagaattgggcaaaggatatagatcaaatggacttgattatgttgtcatttggtcattggtttttgga |
283 |
Q |
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||||||||||||| |||||||| ||| | ||||| |||||||||||||| |||||||||||| ||||| | | ||| ||| |||||||||||| |
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| T |
15287968 |
attataatacaatgtttttggatcttgtcaatgagaggtgggcaaaggatattgatcaaatggacatgattgttgtatcaactggccattggtttttg-- |
15287871 |
T |
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| Q |
284 |
cattccttcagtttactatgagaatgattcagtt |
317 |
Q |
| |
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|||||||| |||||||||||| ||||| |||| |
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| T |
15287870 |
-cttccttcaatttactatgagagtgatttagtt |
15287838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 44248781 - 44248353
Alignment:
| Q |
22 |
tagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcatataggctctattgggaggtggtattttccttcttacaatgcaaa |
121 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |||||| | || | |||||||||||| ||| |||||||| |||||||||||||| ||||| |
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| T |
44248781 |
tagagtcccttatttgcttattatccactgtatcaagccctaaacgtgtccaccatataggctctgatggaaggtggtactttccttcttacaacgcaaa |
44248682 |
T |
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| Q |
122 |
cttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaattataatacaatacatttggatcatgtaagtgagaat |
221 |
Q |
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||||||| |||||||| |||| ||||||||||||||||||||||||| |||||| || ||| | |||||||||||| |||| ||||| |||| | ||| |
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| T |
44248681 |
cttgacagcctattggtcaccttttcttgtgaagggtgatcaaagaataaaggatggtccacaatataatacaatatatttagatcaagtaaatcagatg |
44248582 |
T |
|
| Q |
222 |
tgggcaaaggatatagatcaaatggacttgattatgttgtcatttggtcattggtttttggacattccttcagtttactatgagaatgattcagttatag |
321 |
Q |
| |
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||||| | ||||||||||||||| |||| |||| ||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||| |||||| |
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| T |
44248581 |
tgggctagggatatagatcaaattgactcgattgtgttgtcatttggtcattggtttacggatgttccttcaatttactatgagggtggttcaattatag |
44248482 |
T |
|
| Q |
322 |
gttgttctatatgtcatgatttaaaatcaaaatataatgatattggattttatgatccaatgagaaaggctttaaggattgcccttaatgccataattga |
421 |
Q |
| |
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|||||| || ||||||||| || |||| || |||| ||||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
44248481 |
gttgttttagatgtcatgaatttaaatttaattatactgatattggattttatgttccaatgagaaaggctttaaggactacccttaatagcataattga |
44248382 |
T |
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| Q |
422 |
gaagaaaatggttaaagggaatgaaattg |
450 |
Q |
| |
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||||||||| || | |||||||| ||||| |
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| T |
44248381 |
gaagaaaattgtaagagggaatggaattg |
44248353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 24 - 444
Target Start/End: Original strand, 51382972 - 51383386
Alignment:
| Q |
24 |
gagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcatataggctctattgggaggtggtattttccttcttacaatgcaaact |
123 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||||| | || ||| ||||||||| | | |||||| ||||||||| |||||||||||| |
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| T |
51382972 |
gagtcccttatatgcttattatccactgcttcaaaacctaaacgtgtccgccatctaggctcta---gaaagtggtactttccttctcacaatgcaaact |
51383068 |
T |
|
| Q |
124 |
tgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaattataatacaatacatttggatcatgtaagtgagaattg |
223 |
Q |
| |
|
|| | | |||||| | || |||||||||| ||||| |||||||| ||| |||||||| |||||||||||| ||||||||||||| | ||||| || |
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|
| T |
51383069 |
tgtctttttattggtcgccttttcttgtgaggggtgttcaaagaaaaaacagagggccaatttataatacaatgtatttggatcatgtcaatgagaggtg |
51383168 |
T |
|
| Q |
224 |
ggcaaaggatatagatcaaatggacttgattatgttgtcatttggtcattggtttttggacattccttcagtttactatgagaatgattcagttataggt |
323 |
Q |
| |
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||| | |||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||| ||||||||||| ||| || |||||||| |
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|
| T |
51383169 |
ggctagagatatagatcaaatggacttgattgtgttatcatttggtcattggtttatgg---ttccttcaatttactatgagggtgagtctattataggt |
51383265 |
T |
|
| Q |
324 |
tgttctatatgtcatgatttaaaatcaaaatataatgatattggattttatgatccaatgagaaaggctttaaggattgcccttaatgccataattgaga |
423 |
Q |
| |
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|||| || |||||||||| | |||| || |||| ||||||||| |||||| | | ||||||||||||||||||| | | |||||| |||||||| | |
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|
| T |
51383266 |
tgttttaaatgtcatgatcttaaatttaactataccgatattggaatttatgttgcgatgagaaaggctttaaggactactcttaatagtataattgaaa |
51383365 |
T |
|
| Q |
424 |
agaaaatggttaaagggaatg |
444 |
Q |
| |
|
|||| | ||||||||||||| |
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|
| T |
51383366 |
ggaaagttgttaaagggaatg |
51383386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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