View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19349_low_5 (Length: 429)
Name: NF19349_low_5
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_5 |
 | |
|
| [»] scaffold0488 (1 HSPs) |
| | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
| [»] scaffold0457 (1 HSPs) |
| | |
|
| [»] scaffold0478 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 36770215 - 36770475
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctctagtttgttctttgttgctttgcttttaatgtaacctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36770215 |
tgctaagagtggcatttcaaaagcctataaaacatgatgtgtatggcttgatcttggctctagtttgttctttgttgctttgcttttaatgtaacctgtt |
36770314 |
T |
|
| Q |
101 |
actatcctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttgattgtcta |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36770315 |
actatcctcagt------------ttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttgattgtcta |
36770402 |
T |
|
| Q |
201 |
tttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
36770403 |
tttgggtattggcttagtccccccaatattgtacttttccctttattcgtttattgcatttttctagctttat |
36770475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 9746856 - 9747116
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctctagtttgttctttgttgctttgcttttaatgtaacctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9746856 |
tgctaagagtggcatttcaaaagcatataaatcatgatgtgtatggcttgatcttggctttagtttgttctttgttgctttgcttttattgtaacctgtt |
9746955 |
T |
|
| Q |
101 |
actatcctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttgattgtcta |
200 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9746956 |
actatcctcagt------------ttttcatctcatcactccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttgattgtctt |
9747043 |
T |
|
| Q |
201 |
tttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9747044 |
tttgggtattggcttagtccccccaatattgtacttttccctttattcttttattgcatttttctagctttat |
9747116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 94 - 273
Target Start/End: Complemental strand, 4571047 - 4570868
Alignment:
| Q |
94 |
acctgttactatcctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttga |
193 |
Q |
| |
|
||||||||||||||| |||||||| | |||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571047 |
acctgttactatccttagtagcagactttgttttccattttatccttccttagaagtggtctaaggctacttaggaagtgactttgcttttctgtctttg |
4570948 |
T |
|
| Q |
194 |
ttgtctatttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || ||||||| ||| |||| |||||||| | |||||||||||||| |
|
|
| T |
4570947 |
ttgtctaattgggtattggcttagtccccccaattttatacttttccctctatttttttattgtaattttctagctttat |
4570868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 4571158 - 4571078
Alignment:
| Q |
2 |
gctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctctagtttg-ttctttgttgcttt |
81 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| |||| | |||||| ||| ||| |||| ||||||||| |
|
|
| T |
4571158 |
gctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttagattgattctctgttgcttt |
4571078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 11776157 - 11776440
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctctagtttgtt-ctttgttgctttgc----------ttttaa |
89 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||| |||| | |||||| ||||||||| ||||||| ||||| |||||| |
|
|
| T |
11776157 |
tgctaagagtggcatatctaaagcttataaatcatgatgtgtatgtcttggtttaggctttagtttgttgctttgtttctttgtgtttgtgtcattttaa |
11776256 |
T |
|
| Q |
90 |
tgtaacctgttactatcctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtc |
189 |
Q |
| |
|
|||||| |||||| | |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| || |||||| ||||| |
|
|
| T |
11776257 |
tgtaacttgttaccaccctcagtagcagggtgtgttttccatcttatcccaccttagaagtgatttaaggctacttaggaagtgtctctgctttactgtc |
11776356 |
T |
|
| Q |
190 |
ttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11776357 |
tctattgtctaattgggtattggcttagtccccccaattttgtactttttcctttattcttttattgcatttttctagctttat |
11776440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 106 - 273
Target Start/End: Original strand, 9743147 - 9743318
Alignment:
| Q |
106 |
cctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctg---tcttgattgtctatt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| ||| | || ||||| | | |
|
|
| T |
9743147 |
cctcagtagcagggtgtgtttttcatcttatgcctccttagaagtggtttaaggttactaaggaagtgactttgctttactgttcttttttttgtcgaat |
9743246 |
T |
|
| Q |
203 |
tgggtattggcttagt-ccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| || ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
9743247 |
tgggtattggcttagtcccccccaattttgtactgttcccttttttcttttattgaatttttctagctttat |
9743318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 28091778 - 28091961
Alignment:
| Q |
83 |
cttttaatgtaacctgttactatcctcagtagcagggtgtgtttttcatctta-tccctccttagaagtggtttaaggctacttaggaagtgactttgct |
181 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||| | || || || |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
28091778 |
cttttaatgtaacctgttattacccttagtagcagggtgtgtttttcctgtttgtcattctttagaagtgggttatggctacttaggaagtgactttgct |
28091877 |
T |
|
| Q |
182 |
tttctgtcttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|| | || | ||||||| ||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
28091878 |
ttattatcctttttgtctaattgggctttggcttagt-cccccaatattgtacttttcc-------cttttattgcatttttctagctttat |
28091961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 13528875 - 13529004
Alignment:
| Q |
138 |
cctccttagaagtggtttaaggctacttaggaagtgactttgcttttct----gtcttgattgtctatttgggtattggcttagtccccccaatattgta |
233 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | |||||| | ||||| | ||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
13528875 |
cctccttagaagtggttttaggctacttaggaagtggcaatgctttatttttggtctttactgtttaattgggtattggcttagtcccttcaatattgta |
13528974 |
T |
|
| Q |
234 |
ctttttcctttattcttttattgcattttt |
263 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |
|
|
| T |
13528975 |
cttttccctttattcttttattgcgttttt |
13529004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 13481658 - 13481603
Alignment:
| Q |
208 |
attggcttagtccccccaatattgtactttttcctttattcttttattgcattttt |
263 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13481658 |
attggcttagtcaccccaatattgtacttttccctttattcttttattgcattttt |
13481603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28091665 - 28091709
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatg |
45 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
28091665 |
tgctaagagtggcatatctaaagcttataaatcatgatgtgtatg |
28091709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 33471701 - 33471975
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctctagtttgtt---ctttgttgctttgcttttaatgtaacct |
97 |
Q |
| |
|
||||||||||| ||| || |||||||||||||||||||||||||| |||| | |||||| ||||||||| || |||| | | |||||||||||| | |
|
|
| T |
33471701 |
tgctaagagtgacatatctaaagcttataaatcatgatgtgtatgccttggtttaggctttagtttgttgctctgtgtttgtgttattttaatgtaactt |
33471800 |
T |
|
| Q |
98 |
gttactatcctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttgattgt |
197 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| || |||||| |||||| ||||| |
|
|
| T |
33471801 |
gttactatcctcaatagcagggtgtgttttccatcttatcccaccttagaagtgatttaaggctacttaggaagtgtctctgctttactgtctctattgt |
33471900 |
T |
|
| Q |
198 |
ctatttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
||| ||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33471901 |
ctaattgagtattggcttagt-cccccaattttatactttttcctttattcttttattgcatttttctagctttat |
33471975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 87 - 273
Target Start/End: Original strand, 44775742 - 44775927
Alignment:
| Q |
87 |
taatgtaacctgttactatcctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttct |
186 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| ||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
44775742 |
taatgtaacctgttactatccttagtagcagagtgtgttttccattttatccttcctt-gaagtggtttaaggctactttggaagtgactttgctttttt |
44775840 |
T |
|
| Q |
187 |
gtcttgattgtctatttgggtattggcttagt-ccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
||| ||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
44775841 |
cactttgttgtctaattgagtattggcttagtcccccccaatattgtacttttccctttattcttttattgcattttt-tagctttat |
44775927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 39317959 - 39318029
Alignment:
| Q |
202 |
ttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
39317959 |
ttgggttttggcctagtccccccaatattatacttttcccttt-ttcttttattgcatttttctagctttat |
39318029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 44775637 - 44775722
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctctag-tttgttctttgttgctttgctt |
85 |
Q |
| |
|
|||||||| || ||| || || ||||||||||||||||||||||| |||| | |||||| ||| |||||||| ||||||||||||| |
|
|
| T |
44775637 |
tgctaagaatgacatatctaaggcttataaatcatgatgtgtatgccttggtttaggctttagttttgttctatgttgctttgctt |
44775722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 9264554 - 9264837
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctctagtttgtt-ctttgttgctttgc----------ttttaa |
89 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||| |||| | ||| || ||||||||| ||||||| ||||| |||||| |
|
|
| T |
9264554 |
tgctaagagtggcatatctaaagcttataaatcatgatgtgtatgccttggtttagactttagtttgttgctttgtttctttgtgtttgtgtcattttaa |
9264653 |
T |
|
| Q |
90 |
tgtaacctgttactatcctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtc |
189 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
9264654 |
tgtaacttgttactaccctcagtagcagggtgtgttttccatcttatcccaccttaggagtgatttaaggctacttaggaagtgtctcagctttactgtc |
9264753 |
T |
|
| Q |
190 |
ttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9264754 |
tctattgtctaattggatattggcttagtccccccaattttgtactttttcctttattcttttattgcatttttctagctttat |
9264837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 291 - 422
Target Start/End: Original strand, 12484163 - 12484294
Alignment:
| Q |
291 |
cgattttgcgacaaaatcattaagcttgcaattacttgtgctgcaagttctctagcagtgtttgctttagcctcaagcattttgatcaatagaggaatgc |
390 |
Q |
| |
|
||||| || ||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12484163 |
cgattctgagacaaaatcatcaaactggcaattgcttgtgctgcaagttctctagcagtgtttgctttagcctcaagcatgttgatcaatagaggaatgc |
12484262 |
T |
|
| Q |
391 |
aatcaacttcacccaacattttcttcatctca |
422 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| |
|
|
| T |
12484263 |
aaccaacttcacctaacattttcttcatctca |
12484294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 24622936 - 24623217
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctctagttt-gttctttgttgctttgctt-------ttaatgt |
92 |
Q |
| |
|
||||||||||||||| || |||||||||||| ||||||||||||| |||| | |||||| |||||| ||||| ||||||||||||| || ||| |
|
|
| T |
24622936 |
tgctaagagtggcatatctaaagcttataaaacatgatgtgtatgccttggtttaggctttagttttgttctctgttgctttgcttctttgtgtttgtgt |
24623035 |
T |
|
| Q |
93 |
aacctgttactatcctcagtagcagggtgtgtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttg |
192 |
Q |
| |
|
| | || ||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24623036 |
catttcaatgtaacctcagtagcaaggagtgtttttcatcttatgccttcttagaagtggtttaaggctacttaggaagtgactttgctttactgtcttt |
24623135 |
T |
|
| Q |
193 |
attgtctatttgggtattggctta-gtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||||| || |||| || ||||| ||||||||||| | |||||||||||||| |
|
|
| T |
24623136 |
tttgtctaattgggttttggcttaggtccccccaattttatactgttcccttttttcttttattgaacttttctagctttat |
24623217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 21735063 - 21734994
Alignment:
| Q |
202 |
ttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
21735063 |
ttgggtattggcttagtccccccaattttgtac-ttttcctttattcttttaatgca-ttttctagctttat |
21734994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 8034370 - 8034489
Alignment:
| Q |
157 |
aggctacttaggaagtgactttgcttt---tctg-tcttgattgtctatttgggtattggcttagtcccccc-aatattgtactttttcctttattcttt |
251 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||| ||| || |||||| ||||| |||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
8034370 |
aggctacttaggaagtgacttagctttacatctggtcttttatgtttaattgggttttggcctagtcccccccaatattgtactttt-ccttt-ttcttt |
8034467 |
T |
|
| Q |
252 |
tattgcatttttctagctttat |
273 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8034468 |
tattgcatttttctagctttat |
8034489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 706480 - 706560
Alignment:
| Q |
193 |
attgtctatttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
706480 |
attgtctaattgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
706560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0488 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0488
Description:
Target: scaffold0488; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 4687 - 4805
Alignment:
| Q |
157 |
aggctacttaggaagtgactttgcttttct----gtcttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattctttt |
252 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| ||| || |||||||||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
4687 |
aggctacttaggaagtgtctttgcttttcttttggtcttttatgtttaattgggtattggcttagtccccc-aattttgtactttt-cctttattcttta |
4784 |
T |
|
| Q |
253 |
attgcatttttctagctttat |
273 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
4785 |
aatgcatttttctagctttat |
4805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 11924 - 12043
Alignment:
| Q |
157 |
aggctacttaggaagtgactttgcttttct----gtcttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattctttt |
252 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| ||| || ||| |||||||||| |||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
11924 |
aggctacttaggaagtgtctttgcttttcttatggtcttttatgtttaattgagtattggcttcgtcccctcaattttgtactttt-cctttattctttt |
12022 |
T |
|
| Q |
253 |
attgcatttttctagctttat |
273 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
12023 |
aatgcatttttctagctttat |
12043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 5180193 - 5180119
Alignment:
| Q |
196 |
gtctatttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagcttt |
271 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
5180193 |
gtctaattgggttttggcttagtccccc-aatattgtacttttccctttattcttttattgcaattttctagcttt |
5180119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 40560026 - 40559919
Alignment:
| Q |
285 |
tctcttcgattttgcgacaaaatcattaagcttgcaattacttgtgctgcaagttctctagcagtgtttgctttagcctcaagcattttgatcaatagag |
384 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||| |||| |||||||||| ||| || ||||||||||| ||||||||| ||||| | ||||| |
|
|
| T |
40560026 |
tctctccgattctgcgacaaaatcattaagcttgcgattgcttgagctgcaagttttctttcaccgtttgctttagactcaagcatgttgataagtagag |
40559927 |
T |
|
| Q |
385 |
gaatgcaa |
392 |
Q |
| |
|
| |||||| |
|
|
| T |
40559926 |
ggatgcaa |
40559919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 38140299 - 38140368
Alignment:
| Q |
202 |
ttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
38140299 |
ttgggtattggcctagtccccccaatcttgtacttcttcctt--ttcttttattgcattcctctagctttat |
38140368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5180286 - 5180204
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggctcta-gtttgttctttgttgctttg |
82 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| |||||| ||||| |||||| || ||||||||| |||| ||||| |
|
|
| T |
5180286 |
tgctaagagtggcatatttaaagcttataaatcatgatttgtatgcattgatttaggctttaggtttgttctatgtttctttg |
5180204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 68440 - 68548
Alignment:
| Q |
157 |
aggctacttaggaagtgactttgcttttct----gtcttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattctttt |
252 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||| ||| || |||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
68440 |
aggctacttcggaagtgtctttgcttttcttatggtcttttatgtttaattgggtattggcttagtccccccaattttgtac-ttttcctttattctttt |
68538 |
T |
|
| Q |
253 |
attgcatttt |
262 |
Q |
| |
|
| |||||||| |
|
|
| T |
68539 |
aatgcatttt |
68548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 31107 - 31226
Alignment:
| Q |
157 |
aggctacttaggaagtgactttgcttttct----gtcttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattctttt |
252 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||| ||| || |||||||||| |||| |||||||||| |||||||||| ||||| ||||| | |
|
|
| T |
31107 |
aggctatttaggaagtgtctttgcttttcttatggtcttttatgtttaattgggtattgccttaatccccccaattttgtactttt-ccttttttcttct |
31205 |
T |
|
| Q |
253 |
attgcatttttctagctttat |
273 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
31206 |
aatgcatttttctagctttat |
31226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 8828 - 8712
Alignment:
| Q |
159 |
gctacttaggaagtgactttgcttt---tctg-tcttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattcttttat |
254 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||| || |||||| ||||| ||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
8828 |
gctacttaggaagtgactttgctttacatctggtcttt-ttgtttaattgggttttggcctagtccccc-aatattgtacttttcacttttctcttttat |
8731 |
T |
|
| Q |
255 |
tgcatttttctagctttat |
273 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
8730 |
tgcatttttttagctttat |
8712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0478 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 5092 - 5023
Alignment:
| Q |
202 |
ttgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
273 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
5092 |
ttgggttttggcctagtcccct-aatattgtactttttccttt-ttattttattgcatttttctagctttat |
5023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17350752 - 17350694
Alignment:
| Q |
1 |
tgctaagagtggcatttcaaaagcttataaatcatgatgtgtatggcttgatctaggct |
59 |
Q |
| |
|
||||||||||| ||| || |||||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
17350752 |
tgctaagagtgacatatctaaagcttataaatcatgatgtgtatgccttggtttaggct |
17350694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 21574540 - 21574420
Alignment:
| Q |
157 |
aggctacttaggaagtgactttgcttt---tctg-tcttgattgtctatttgggtattggcttagtccccccaatattgtactttttcctttattctttt |
252 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| |||| | || || |||||| ||||| ||||| ||||||||||||||||| ||||| ||| || |
|
|
| T |
21574540 |
aggctacttaggatgtgactttgctttacatctggtctttttagtttaattgggttttggcctagtctccccaatattgtactttccccttttctctatt |
21574441 |
T |
|
| Q |
253 |
attgcatttttctagctttat |
273 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
21574440 |
attgcatttttttaactttat |
21574420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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