View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19349_low_9 (Length: 365)
Name: NF19349_low_9
Description: NF19349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19349_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 11807274 - 11806922
Alignment:
| Q |
1 |
attgatgtgattgtgagaacattttcacctactcattttgaaggttcttgggataagggaggtatttgttcaaagaaaaatccatataaatatgaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11807274 |
attgatgtgattgtgagaacattttcacctactcattttgaaggttcttgggataagggaggtacttgttcaaagaaaaatccatataaatatgaggaga |
11807175 |
T |
|
| Q |
101 |
agaaacttgaaggaatggaagcaaagataagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggt |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11807174 |
agaaacttgaaggaatggaagctaagataagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggt |
11807075 |
T |
|
| Q |
201 |
gcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11807074 |
gcttgatataacaaaattggcattgttgagaccagatggtcatgcaggagcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaa |
11806975 |
T |
|
| Q |
301 |
aacgattgtactcattggtgcttgccaggacctattgatacttggaatgagat |
353 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11806974 |
aacgattgtactcattggtgcttgccaggacctattgatacttggaatgagat |
11806922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 44248356 - 44248004
Alignment:
| Q |
1 |
attgatgtgattgtgagaacattttcacctactcattttgaaggttcttgggataagggaggtatttgttcaaagaaaaatccatataaatatgaggaga |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||| | |||||||| ||||||||| |
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| T |
44248356 |
attgatgtaattgtgagaacatactcacctactcattttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggaga |
44248257 |
T |
|
| Q |
101 |
agaaacttgaaggaatggaagcaaagataagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggt |
200 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| | |||| || ||||| |||||||||||||| |||| |
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| T |
44248256 |
agaaacttgaaggaatggatgctaagataagaagtattgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggt |
44248157 |
T |
|
| Q |
201 |
gcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaa |
300 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||| |
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| T |
44248156 |
gcttgatataacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaa |
44248057 |
T |
|
| Q |
301 |
aacgattgtactcattggtgcttgccaggacctattgatacttggaatgagat |
353 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
44248056 |
aatgattgtgttcattggtgcttgccaggacctatagatatttggaatgagat |
44248004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 15284204 - 15284556
Alignment:
| Q |
1 |
attgatgtgattgtgagaacattttcacctactcattttgaaggttcttgggataagggaggtatttgttcaaagaaaaatccatataaatatgaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| ||||||||||| | | |||||| | ||||||||| |
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| T |
15284204 |
attgatgtgattgtgagaacatactcacctactcattttgaaggtggttgggataagggtggtacttgttcaaagagagagccatatggaaatgaggaga |
15284303 |
T |
|
| Q |
101 |
agaaacttgaaggaatggaagcaaagataagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggt |
200 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| | ||||||||||||| |||||||||| || |||| |||||||| ||||||||||||| |||| |
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|
| T |
15284304 |
agaaacttgaaggaatggatgctaagataagaagtgttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggt |
15284403 |
T |
|
| Q |
201 |
gcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| || | ||||||| |||||||| |
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|
| T |
15284404 |
gcttgatataacaaaattggcattgttgagaccagatggtcatgctggtgcttatatgaatccttttccatttgcaaatggagttccaaaatatgtacaa |
15284503 |
T |
|
| Q |
301 |
aacgattgtactcattggtgcttgccaggacctattgatacttggaatgagat |
353 |
Q |
| |
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|| |||||| |||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15284504 |
aatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagat |
15284556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 4 - 353
Target Start/End: Complemental strand, 15287711 - 15287359
Alignment:
| Q |
4 |
gatgtgattgtgagaacattttcacctactcattttgaaggttcttgggataagggaggtatttgttcaaagaaaaatccatataaatatgaggagaaga |
103 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||| || || |||| | | |||||||||| |
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|
| T |
15287711 |
gatgtgattgttaaaacattttcacctgctcattttgaaggtgattgggataaggctggtacttgttcaaagactaagccttatagaaaagaggagaaga |
15287612 |
T |
|
| Q |
104 |
aacttgaaggaatggaagcaaagataagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttgga----ttaaatttgaagg |
199 |
Q |
| |
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| ||| ||||||||| | |||| ||||| || |||||||| |||| |||| ||| ||| |||| |||| || ||| | ||| | |||| || |
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| T |
15287611 |
tagttggaggaatggatggtgagattagaaggattgagatagaagaagtggaaagtgccaagacaaaagctaataaatttgaaggtattagaattga-gg |
15287513 |
T |
|
| Q |
200 |
tgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtaca |
299 |
Q |
| |
|
|| | ||| |||| ||||||||||| |||||||||||||||||| ||||| |||| | | |||||||||||||||| || | ||||||| ||||||| |
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|
| T |
15287512 |
tgttggatgtaactaaattggcattattgagaccagatggtcatccaggtccttacatgaatccttttccatttgcaaatggagttccaaaatatgtaca |
15287413 |
T |
|
| Q |
300 |
aaacgattgtactcattggtgcttgccaggacctattgatacttggaatgagat |
353 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15287412 |
aaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagat |
15287359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 215 - 353
Target Start/End: Original strand, 15262929 - 15263067
Alignment:
| Q |
215 |
aattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | | |||||||||| || || || |||||||| |||| ||||| |||||| ||| |
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| T |
15262929 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttca |
15263028 |
T |
|
| Q |
315 |
ttggtgcttgccaggacctattgatacttggaatgagat |
353 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
15263029 |
ttggtgtttgcctggacctatagatacttggaatgagat |
15263067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 15256839 - 15256766
Alignment:
| Q |
202 |
cttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgc |
275 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||| |
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|
| T |
15256839 |
cttgatgtaactaaattggcattgttgagaccagatggtcatccaggtccttatatgtacccttttccatttgc |
15256766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 356
Target Start/End: Complemental strand, 15265357 - 15265210
Alignment:
| Q |
209 |
taacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattg |
308 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| ||||| |||||| | ||||||||||||| ||| ||| | | |||| ||||| ||||| |
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|
| T |
15265357 |
taacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatccttttccattctttaatggggttcaagaacatgtgcaaaatgattg |
15265258 |
T |
|
| Q |
309 |
tactcattggtgcttgccaggacctattgatacttggaatgagatatt |
356 |
Q |
| |
|
| ||||||||| ||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
15265257 |
tgttcattggtgtttgcctggaccaattgatacatggaatgagatatt |
15265210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 5 - 353
Target Start/End: Original strand, 51383393 - 51383741
Alignment:
| Q |
5 |
atgtgattgtgagaacattttcacctactcattttgaaggttcttgggataagggaggtatttgttcaaagaaaaatccatataaatatgaggagaagaa |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||||||| | |||||| || ||| ||||||||| |
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| T |
51383393 |
atgtgattgtgagaacattttcaccatctcattttgaaggtggttgggataagggaggaacttgttcaaagagtgagccatatgaaaatggggagaagaa |
51383492 |
T |
|
| Q |
105 |
acttgaaggaatggaagcaaagataagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggtgctt |
204 |
Q |
| |
|
|||||||| |||||| || ||||||||||||| ||||||||||||| ||||||||||| |||| || ||||| | ||||| |||||| |||||||| |
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|
| T |
51383493 |
acttgaagaaatggatgctgagataagaagtattgagatagaggaagtgaaaaatgctaagtcaaaagctgaacaattgggatttaatttggaggtgctt |
51383592 |
T |
|
| Q |
205 |
gatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || | | ||||||||||||||||||| |||||||||| |||||||||| | |
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|
| T |
51383593 |
gatataacaaaattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatg |
51383692 |
T |
|
| Q |
305 |
attgtactcattggtgcttgccaggacctattgatacttggaatgagat |
353 |
Q |
| |
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||||| ||||||||| |||||||||||||| || |||||||||||||| |
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|
| T |
51383693 |
attgtgttcattggtgtttgccaggacctatagacacttggaatgagat |
51383741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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