View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_high_2 (Length: 507)
Name: NF1934_high_2
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 48753297 - 48752973
Alignment:
| Q |
13 |
aatatttctactgatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataat |
112 |
Q |
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| T |
48753297 |
aatatttctactcatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataat |
48753198 |
T |
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| Q |
113 |
agaataaacatgttacacgaccgaaacagaaagaagtggcaactgacaatgacacacaacactgaatgtt--aaagaaggaaagaaggagagcttagaat |
210 |
Q |
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| T |
48753197 |
agaataaacatgttacacgaccgaaacagaaagaagtggcaactgacaatgacacacaacactgaatgttaaaaagaagga---aaggagagcttagaat |
48753101 |
T |
|
| Q |
211 |
tctaactcattatatacgtatgattttataacaaaattgtgattttatctgacatgtagcatattactactcttacttcggaactcaaacttaaagccac |
310 |
Q |
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| T |
48753100 |
tctaactc-----------atgattttataccaaaattgtgattttatctgacatgtagcatattactactcttacttcggaactcaaacttaaagccac |
48753012 |
T |
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| Q |
311 |
catcattataagaaattaattaggaaagcaaactaagat |
349 |
Q |
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| T |
48753011 |
catcattataagaaattaattaggaaagcaaactaagat |
48752973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 385 - 463
Target Start/End: Complemental strand, 48752937 - 48752859
Alignment:
| Q |
385 |
atccttcagtcttatgtaagttcgtatgtgcacctcgatctttccaacaaaaactcatacatcactttactgtctccat |
463 |
Q |
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| T |
48752937 |
atccttcagtcttatgtaagttcgtatgtgcacctcgatctttccaacaaaaactcatacatcactttactgtctccat |
48752859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 8e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 52092423 - 52092758
Alignment:
| Q |
13 |
aatatttctactgatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataat |
112 |
Q |
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| T |
52092423 |
aatatttctactaatttgtgtttattgcttg------tacttctctgttttgaggtatgcaacagtgattgtcacacaaagtacaaaccagtcaaataat |
52092516 |
T |
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| Q |
113 |
agaat-aaacatgttacacgaccg--------aaacagaaagaag--tggcaactgacaatgacacacaacactgaatgttaaagaaggaaagaaggaga |
201 |
Q |
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| T |
52092517 |
agaattaaacatgttacaagaagtgtattggaaaacataataaataatggcaactgacaatgacacacaacactgaatgttaaagaagga--------ga |
52092608 |
T |
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| Q |
202 |
gcttagaattct--aactcattatatacgtatgattttataacaaaattgtgattttatctgacatgtagcatattactactcttacttcggaactcaaa |
299 |
Q |
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| T |
52092609 |
gcttagaattctctaactcatgatttacgtatgattctataccaaaattgtgattttatctcacatgtagcatattaccactcttactacggaactcaaa |
52092708 |
T |
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| Q |
300 |
cttaaagccaccatcattataagaaattaattaggaaagcaaactaagat |
349 |
Q |
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| T |
52092709 |
cttaaagccaccaccattataagaaattaattaggaaagcaaactaagat |
52092758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 411 - 492
Target Start/End: Original strand, 52083482 - 52083563
Alignment:
| Q |
411 |
tgtgcacctcgatctttccaacaaaaactcatacatcactttactgtctccatgtattccatatctccgaaggcaatctatg |
492 |
Q |
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| T |
52083482 |
tgtgcacctcgatctttccaacaaaaactcatacttcactttactgtctccatgtattccatatctccgaatgcaatctatg |
52083563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 411 - 492
Target Start/End: Original strand, 52092845 - 52092926
Alignment:
| Q |
411 |
tgtgcacctcgatctttccaacaaaaactcatacatcactttactgtctccatgtattccatatctccgaaggcaatctatg |
492 |
Q |
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| T |
52092845 |
tgtgcacctcgatctttccaacaaaaactcatacttcactttactgtctccatgtattccatatctccgaatgcaatctatg |
52092926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 33575817 - 33575759
Alignment:
| Q |
17 |
tttctactgatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatca |
76 |
Q |
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| T |
33575817 |
tttctactcatttgtgtttattgcttg-tttactacttctctgttttgaggtctgcatca |
33575759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 38462727 - 38462695
Alignment:
| Q |
95 |
acaaaccagtcaaataatagaataaacatgtta |
127 |
Q |
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| T |
38462727 |
acaaaacagtcaaataatagaataaacatgtta |
38462695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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