View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1934_high_4 (Length: 446)

Name: NF1934_high_4
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1934_high_4
NF1934_high_4
[»] chr7 (2 HSPs)
chr7 (19-263)||(21477097-21477347)
chr7 (264-429)||(21477373-21477538)
[»] chr8 (3 HSPs)
chr8 (37-108)||(33319788-33319860)
chr8 (381-414)||(21608247-21608280)
chr8 (279-328)||(33319520-33319569)
[»] chr4 (12 HSPs)
chr4 (351-417)||(27478969-27479036)
chr4 (351-417)||(27486029-27486096)
chr4 (380-417)||(27508839-27508876)
chr4 (354-417)||(27506685-27506749)
chr4 (351-405)||(27513862-27513917)
chr4 (385-427)||(27489937-27489979)
chr4 (380-417)||(27524511-27524548)
chr4 (385-417)||(27468448-27468480)
chr4 (385-417)||(27475700-27475732)
chr4 (389-417)||(27497447-27497475)
chr4 (354-405)||(27501316-27501368)
chr4 (385-417)||(27514878-27514910)
[»] chr5 (2 HSPs)
chr5 (351-417)||(1754675-1754742)
chr5 (351-417)||(1756843-1756910)
[»] chr3 (2 HSPs)
chr3 (381-414)||(38032272-38032305)
chr3 (381-414)||(50913486-50913519)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 21477097 - 21477347
Alignment:
Q  19 gtgcaaaagcaacttatggaagcttaattctgttgatcaatccattgaaggaggtaatttgtgtggattcttgaggttctattttaatgtcatttttcgt 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477097 gtgcaaaagctacttatggaagcttaattctgttgatcaatccattgaaggaggtaatttgtgtggattcttgaggttctattttaatgtcatttttcgt 21477196  T
Q  119 tttgtggtttatttcttgttaattcttgtgcaattcggtttatcttatgacgcaattgatcatatataatttcgttttgtgcaattttat------ttta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||    
T  21477197 tttgtggtttatttcttgttaattcttgtgcaattcggtttatcttatgacgcaattgatcatatataatttcgttttgtgcaattttattgatagttta 21477296  T
Q  213 ctcaattgatttatagcttgtttaggttaagtttataattcttaattagag 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477297 ctcaattgatttatagcttgtttaggttaagtttataattcttaattagag 21477347  T

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Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 264 - 429
Target Start/End: Original strand, 21477373 - 21477538
Alignment:
Q  264 aattgtgcttcagacgcttgttatgttatggttaatagaactttttgatgcttaatcaataggaaacaaattctctagatgcctgttttcaagtatgata 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477373 aattgtgcttcagacgcttgttatgttatggttaatagaactttttgatgcttaatcaataggaaacaaattctctagatgcctgttttcaagtatgata 21477472  T
Q  364 ttgggatacaaacggtgtcattttctctccaacatacactgcaacatagcccttccttatttctct 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477473 ttgggatacaaacggtgtcattttctctccaacatacactgcaacatagcccttccttatttctct 21477538  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 33319860 - 33319788
Alignment:
Q  37 gaagcttaattctgttgatcaatccattgaaggag-gtaatttgtgtggattcttgaggttctattttaatgt 108  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||  ||||||||||||||||||| ||||||    
T  33319860 gaagcttaattatgttgatcaatccattgacggagagtaatttgtacggattcttgaggttctattctaatgt 33319788  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Complemental strand, 21608280 - 21608247
Alignment:
Q  381 tcattttctctccaacatacactgcaacatagcc 414  Q
    ||||||||||||||||||||||||||| ||||||    
T  21608280 tcattttctctccaacatacactgcaagatagcc 21608247  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 33319569 - 33319520
Alignment:
Q  279 gcttgttatgttatggttaatagaactttttgatgcttaatcaataggaa 328  Q
    ||||||| ||||||| ||||| ||||||| | ||||||||||||||||||    
T  33319569 gcttgttttgttatgattaattgaactttgttatgcttaatcaataggaa 33319520  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 27478969 - 27479036
Alignment:
Q  351 ttcaagtatgatattgggata-caaacggtgtcattttctctccaacatacactgcaacatagccctt 417  Q
    ||||||||||||||||||| | ||||| |  ||  |||||||||||||||||||||||||||||||||    
T  27478969 ttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctt 27479036  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 27486029 - 27486096
Alignment:
Q  351 ttcaagtatgatattgggata-caaacggtgtcattttctctccaacatacactgcaacatagccctt 417  Q
    ||||||||||||||||||| | ||||| |  ||  |||||||||||||||||||||||||||||||||    
T  27486029 ttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctt 27486096  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 27508876 - 27508839
Alignment:
Q  380 gtcattttctctccaacatacactgcaacatagccctt 417  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27508876 gtcagtttctctccaacatacactgcaacatagccctt 27508839  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 417
Target Start/End: Complemental strand, 27506749 - 27506685
Alignment:
Q  354 aagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgcaacatagccctt 417  Q
    ||||||||||||||||| |||||| | |||  ||||||||| ||||| |||||||||||||||||    
T  27506749 aagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctt 27506685  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 27513862 - 27513917
Alignment:
Q  351 ttcaagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgc 405  Q
    |||||||||||||||||||| |||||| |  ||||||||||||| |||||||||||    
T  27513862 ttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgc 27513917  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 27489979 - 27489937
Alignment:
Q  385 tttctctccaacatacactgcaacatagcccttccttatttct 427  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||    
T  27489979 tttctctccaacatacactacaacatagccctttcttacttct 27489937  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 27524548 - 27524511
Alignment:
Q  380 gtcattttctctccaacatacactgcaacatagccctt 417  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  27524548 gtcagtttctctccaacatacactgcaacgtagccctt 27524511  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 27468448 - 27468480
Alignment:
Q  385 tttctctccaacatacactgcaacatagccctt 417  Q
    |||||||||||||||||| ||||||||||||||    
T  27468448 tttctctccaacatacaccgcaacatagccctt 27468480  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 27475700 - 27475732
Alignment:
Q  385 tttctctccaacatacactgcaacatagccctt 417  Q
    |||||||||||||||||| ||||||||||||||    
T  27475700 tttctctccaacatacacggcaacatagccctt 27475732  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 417
Target Start/End: Original strand, 27497447 - 27497475
Alignment:
Q  389 tctccaacatacactgcaacatagccctt 417  Q
    |||||||||||||||||||||||||||||    
T  27497447 tctccaacatacactgcaacatagccctt 27497475  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 27501368 - 27501316
Alignment:
Q  354 aagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgc 405  Q
    ||||||||||||||||| |||||| || |||||| |||||||||||| |||||    
T  27501368 aagtatgatattgggatcacaaaccgtttcatttcctctccaacatatactgc 27501316  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 27514910 - 27514878
Alignment:
Q  385 tttctctccaacatacactgcaacatagccctt 417  Q
    |||||||||||||||||| ||||||||||||||    
T  27514910 tttctctccaacatacaccgcaacatagccctt 27514878  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 1754742 - 1754675
Alignment:
Q  351 ttcaagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgcaacatagccctt 417  Q
    |||||||||||||||||||| |||  | || ||  ||||||||||| |||||||||||||||||||||    
T  1754742 ttcaagtatgatattgggatcacatgccgtttctgtttctctccaatatacactgcaacatagccctt 1754675  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 1756843 - 1756910
Alignment:
Q  351 ttcaagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgcaacatagccctt 417  Q
    |||||||||||||||||||| |||||| |  ||  |||||||||||||| |||||||| |||||||||    
T  1756843 ttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctt 1756910  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Complemental strand, 38032305 - 38032272
Alignment:
Q  381 tcattttctctccaacatacactgcaacatagcc 414  Q
    ||||||||||||||||||||||||||| ||||||    
T  38032305 tcattttctctccaacatacactgcaagatagcc 38032272  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Complemental strand, 50913519 - 50913486
Alignment:
Q  381 tcattttctctccaacatacactgcaacatagcc 414  Q
    ||||||||||||||||||||||||||| ||||||    
T  50913519 tcattttctctccaacatacactgcaagatagcc 50913486  T

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