View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_high_5 (Length: 434)
Name: NF1934_high_5
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 52571601 - 52571190
Alignment:
| Q |
18 |
accatgtagcaggcataatggttctcactttcaatcaagttgttgatataacactaatattctagcttaatatctatgtttaaggctacagttatccaac |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52571601 |
accatgtagcaggcataatggttctcattttcaatcaagttgttgatataacactaatattctagcttaatatctatgtttaaggctacagttatccaac |
52571502 |
T |
|
| Q |
118 |
aatgcacgattggtatggttacaagaatgtagttaggttaatttgatgattgcttccctaaaggctaaaactgttggaaatgcaataccattaacctgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52571501 |
aatgcacgattggtatggttacaagaatgtagttaggttaatttgatgcttgcttccctaaaggctaaaactgttggaaatgcaatgccattaacctgtt |
52571402 |
T |
|
| Q |
218 |
actgtcctgttcagc--nnnnnnnntgaacttctgaagtgatgagcttgtgaagatcaaagcctatttatcagattgaaactttaacctatcagttatta |
315 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52571401 |
actgtcctgttcagcaaaaaaaaaatgaacttccgaagtgatgagcttgtgaagatcaaagcctatttatcagattgaaactttaacctatcagttatta |
52571302 |
T |
|
| Q |
316 |
ataatgcaagagtcaagagaaagttaaaacttgggtatggaatttgcacgcaggaactgcttaagaatgtccttgtcttcatcaatttgttttttctcca |
415 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52571301 |
ataatgcaagagtcaagaggaagttaaaacttgggtatggaatttgcacgcaggaactgcttaagaatgtccttgtcttcgtcaatttgttttttctcca |
52571202 |
T |
|
| Q |
416 |
tagcatcctttg |
427 |
Q |
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| T |
52571201 |
tagcatcctttg |
52571190 |
T |
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