View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_high_8 (Length: 293)
Name: NF1934_high_8
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 11673123 - 11672864
Alignment:
| Q |
16 |
aatatcttaatttgtactgaaacatccacatgcgtcaaatagtattttattgtcaacaaagaaaaataatacttctcgtaaaaaatactcaaaatagtgc |
115 |
Q |
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| T |
11673123 |
aatatcttaatttgtactgaaacatccacatgcgtcaaatagtattttattgtcatcaaagaaaaataatacttctcgtaaaaaatactcaaaatagtgc |
11673024 |
T |
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| Q |
116 |
ctattttattatatccctttcggatacaaacattaactccaatgcaaaatagataccattgccatacaatacaagtccaaattactcttattcttatatt |
215 |
Q |
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| T |
11673023 |
ctattttattatatccctttcggatacaaacattagctccaatgcaaaatagataccattgccatacaatacaagtccaaattactcttagtcttatatt |
11672924 |
T |
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| Q |
216 |
ttaagaatattcttgacaaatggaagtgttggatgttgatcatgattagctagattaatc |
275 |
Q |
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| T |
11672923 |
ttaagaatattcttgacaaatggaagtgttggatgttgatcatgattagctagattaatc |
11672864 |
T |
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